TABLE 1.
Structural statistics for the 70 accepted (<SA>) and the energy-minimized average (<SA>r) NMR structures of 4F associated with DMPC disc
Parameter | Value |
---|---|
Experimental restraints | |
Intraresidue NOEs | 81 |
Sequential NOEs | 34 |
Medium and long range NOEs (i, i + 2; i, i + 3; and i, i + 4) | 35 |
Interresidue side chain NOEs | 70 |
Hydrogen bonds (H-O distance) | 15 |
Φ angles | 17 |
Ψ angles | 16 |
Total |
268 |
Mean r.m.s. deviation from experimental restraints (<SA> ± S.D.) | |
Distance restraints (Å) | 0.060 ± 0.003 |
Dihedral angle (degrees) |
0.098 ± 0.119 |
Mean r.m.s. deviation from ideal geometry (<SA> ± S.D.) | |
Bonds (Å) | 0.005 ± 0.000 |
Angles (degrees) | 0.685 ± 0.044 |
Impropers (degrees) |
0.580 ± 0.043 |
Ramachandran statistics from PROCHECK-NMRa | |
Residues in most favored α-helical region |
100% |
r.m.s. deviation from the average structure (Å) | |
Backbone N, Cα, C | 0.583 |
All heavy atoms |
1.744 |
Pairwise r.m.s. deviation analysis | |
Average backbone pairwise r.m.s. deviation (Å) | 0.826 ± 0.245 |
Average nonhydrogen atom pairwise r.m.s. deviation (Å) | 2.542 ± 0.452 |
X-PLOR potential energies |
||
---|---|---|
<SA> ± S.D. | <SA>rb | |
kcal/mol | ||
Eoverall | 106.850 ± 10.905 | 96.671 |
Ebond | 7.891 ± 0.725 | 7.334 |
Eangle | 41.099 ± 4.989 | 36.417 |
Eimpropers | 9.921 ± 1.453 | 9.213 |
Evdw | 8.801 ± 2.674 | 8.175 |
ENOE | 39.097 ± 3.931 | 35.531 |
Ecdih | 0.039 ± 0.064 | 0.000 |
See Ref. 55.
200 cycles of conjugate gradient minimization were used. All of the NMR constraints were enforced during the energy minimization of the average coordinates.