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. 2008 Sep 18;9(9):R138. doi: 10.1186/gb-2008-9-9-r138

Table 2.

Protein features

Protein feature Source
Gene names and aliases BioGRID [50] 2.0.34
Amino acid sequences Biomart [58]
Paralogs COG [59], Biomart [58]
Pfam A/B motifs Pfam [31] 21.0
SMART [32,33] motifs InterPro [60] 15.0
Prosite [30] motifs
SCOP [34] superfamilies
GO functional annotations GO [35] 05/2007 download

Protein features used to annotate proteins in the built-in data sets provided with NetGrep.