TABLE 2.
Pathotype or isolate group | Strain | Nucleotide(s) or microRNA corresponding to genomic positiona:
|
||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
132631 | 132637 | 132659 | 132671 | 132740 | 132888 | 133062 | 133098 | 133206 | 133231 | 133232 | 133311 | 133384 | 133392 | 133419 | 133444 | 133484 | 133826 | 134327 | ||
v | CU2 | NDe | ND | ND | T/C | |||||||||||||||
571 | ND | ND | ND | ND | ND | T | ||||||||||||||
573 | ND | ND | ND | ND | T | |||||||||||||||
617 | ND | ND | T/C | |||||||||||||||||
GAb | ||||||||||||||||||||
vv | Md5c | G | C | T | C | G | T | G | A | G | A | T | T | C | A | C | C | A | A | C |
RB1B | A/G | C/G | C/T | T/C | ||||||||||||||||
549A | C | ND | ND | |||||||||||||||||
595 | ND | T/C | ||||||||||||||||||
543 | T | G/A | T/C | |||||||||||||||||
543P | ND | ND | C | |||||||||||||||||
vv+ | 648 | T | T/C | |||||||||||||||||
615K | ND | ND | ND | T | ND | T | ||||||||||||||
686 | T | A/G | T | |||||||||||||||||
660 | T | T/C | T/C | |||||||||||||||||
MK | T | T/C | ||||||||||||||||||
CD | T | T/A | C/T | G/A | T | |||||||||||||||
Field isolates | 06-011 | T | ND | ND | ||||||||||||||||
06-012 | C/T | ND | ND | |||||||||||||||||
06-013 | A/G | G/A | T | T | ||||||||||||||||
06-014 | ND | ND | ND | |||||||||||||||||
06-015 | ND | ND | T | |||||||||||||||||
06-016 | ND | ND | ND | ND | T | |||||||||||||||
mdv1-miR-M9-5pd | mdv1-miR-M9-5pd | mdv1-miR-M9-3pd |
The genomic position indicates the location in one of the repeats; there are two copies in the MDV genome.
The sequence of GA (accession no. AF147806) was obtained from GenBank.
Md5 (accession no. AF243438) is the reference strain.
mdv-miR-M9-5p spans 133374 to 133395; mdv-miR-M9-3p spans 133414 to 133435.
ND, not determined. Empty cells indicate that the nucleotide is the same as that in the reference strain.