Table I.
No. of Intact Elements with TSDs | % Intact with TSDs | % Solo LTRs with TSDs | % Fragmented | No. of Intact Elements Dated | Insertion Date, Mya (Average) | Ts:Tv | (Ts+Tv):Indel | |
---|---|---|---|---|---|---|---|---|
G. maxb | 45 | 55 | 7 | 38 | 45 | 1.3 | 2.41 | 12.81 |
G. tomentellab | 23 | 52 | 7 | 41 | 22 | 0.8 | 2.56 | 13.7 |
P. vulgarisb | 7 | nd | nd | nd | 7 | 0.8 | 1.89 | nd |
Arabidopsiscd | nd | 30 | 35 | 35 | 87 | 1.9 | nd | nd |
Ricece | nd | 24 | 35 | 41 | 260 | 1.3 | nd | nd |
L. japonicusc | nd | 57 | 10 | 33 | 13 | 0.3 | 2.5 | 7.3 |
M. truncatulac | nd | 37 | 21 | 42 | 19 | 0.2 | 2.4 | 3.6 |
Maizec | nd | 61 | 9 | 30 | 47 | 0.7 | 3.9 | 8.2 |
Barleyc | nd | 35 | 17 | 48 | 17 | 1.3 | 1.6 | 12.0 |
T. monococcumc | nd | 50 | 10 | 40 | 30 | 1.0 | 1.9 | 8.7 |
Percentages are relative to total number of elements identified that contain at least a partial LTR sequence with homology to an intact LTR-retrotransposon. Remnants lacking any LTR homology were not included in the calculations used in this table. Ts, Transitions; Tv, transversions; TSD, target site duplication.
Summary data taken from Supplemental Tables S2 and S3.
Data taken from tables 1 and 4 of Vitte and Bennetzen (2006).
Data taken from table 1 of Devos et al. (2002).
Data taken from table 2 of Ma et al. (2004).