Table 4.
Comparison of experiment arrays results using R/Bioconductor and dChip implementation
| probe set | Gene Name | GCRMA | RMA | dChip Linux |
| 33304_at | interferon stimulated gene 20 kDa | 3196.51 | 2268.74 | 2244.54 |
| 823_at | chemokine (C-X3-C motif) ligand 1 | 94.32 | 199.31 | 303.39 |
| 200606_at | desmoplakin (DPI, DPII) | 346.10 | 472.57 | 459.07 |
| 202269_x_at | guanylate binding protein 1 | 9812.82 | 4339.89 | 3651.44 |
| 202270_at | guanylate binding protein 1 | 6437.35 | 2278.30 | 2282.05 |
| 202687_s_at | tumor necrosis factor member 10 | 2156.88 | 1550.21 | 2133.03 |
| 202688_at | tumor necrosis factor member 10 | 7854.88 | 3398.70 | 3309.36 |
| 202748_at | guanylate binding protein 2, interferon-inducible | 2345.96 | 1250.53 | 1007.71 |
| 202869_at | 2',5'-oligoadenylate synthetase 1 | 3531.07 | 2325.40 | 3112.07 |
| 203148_s_at | tripartite motif-containing 14 | 2521.04 | 1435.02 | 1774.94 |
| 203153_at | interferon-induced protein | 15412.19 | 8556.41 | 6863.81 |
| 203236_s_at | lectin, galactoside-binding, soluble, 9 | 1711.84 | 847.55 | 1540.56 |
| 203595_s_at | retinoic acid- and interferon-inducible protein | 2012.55 | 2181.61 | 2144.76 |
| 204070_at | retinoic acid receptor responder 3 | 211.37 | 292.39 | 314.03 |
| 204439_at | chromosome 1 open reading frame 29 | 3293.52 | 2515.21 | 1982.76 |
| 204533_at | chemokine (C-X-C motif) ligand 10 | 3827.84 | 3009.14 | 3018.77 |
| 204769_s_at | transporter 2, ATP-binding cassette | 351.22 | 608.05 | 971.37 |
| 204972_at | 2'-5'-oligoadenylate synthetase 2 | 2566.06 | 1918.87 | 2173.07 |
| 204994_at | myxovirus (influenza virus) resistance 2 | 1879.30 | 1864.21 | 2312.15 |
| 205660_at | 2'-5'-oligoadenylate synthetase-like | 2757.19 | 3007.87 | 2793.93 |
| 206271_at | toll-like receptor 3 | 572.08 | 560.92 | 905.37 |
| 206503_x_at | promyelocytic leukemia | 737.59 | 913.65 | 910.07 |
| 206553_at | 2'-5'-oligoadenylate synthetase 2 | 315.50 | 323.83 | 873.65 |
| 207375_s_at | interleukin 15 receptor, alpha | 438.00 | 1020.22 | 1114.76 |
| 207928_s_at | glycine receptor, alpha 3 | 8.43 | 14.61 | 2.37 |
| 208012_x_at | SP110 nuclear body protein | 4220.13 | 2720.23 | 2436.07 |
| 208392_x_at | SP110 nuclear body protein | 347.25 | 510.43 | 842.89 |
| 208436_s_at | interferon regulatory factor 7 | 2270.19 | 2097.07 | 3397.64 |
| 209546_s_at | apolipoprotein L, 1 | 1379.27 | 915.53 | 2170.99 |
| 209969_s_at | signal transducer and activator of transcription 1 | 3157.23 | 2027.40 | 1642.44 |
| 210029_at | indoleamine-pyrrole 2,3 dioxygenase | 833.17 | 1133.97 | 814.88 |
| 210163_at | chemokine (C-X-C motif) ligand 11 | 4702.03 | 2094.38 | 2400.30 |
| 210797_s_at | 2'-5'-oligoadenylate synthetase-like | 3022.68 | 2622.26 | 2210.17 |
| 210846_x_at | tripartite motif-containing 14 | 20.39 | 70.48 | 139.55 |
| 211013_x_at | promyelocytic leukemia | 952.73 | 861.97 | 891.32 |
| 211122_s_at | chemokine (C-X-C motif) ligand 11 | 6782.66 | 2521.40 | 2835.46 |
| 213261_at | KIAA0342 gene product | 184.92 | 481.56 | 598.16 |
| 213716_s_at | secreted and transmembrane 1 | 924.99 | 1132.93 | 1844.02 |
| 213797_at | vipirin | 9384.39 | 4037.25 | 4883.14 |
| 214038_at | chemokine (C-C motif) ligand 8 | 131.65 | 153.26 | 209.79 |
| 214059_at | interferon-induced protein 44 | 460.99 | 417.83 | 417.94 |
| 214329_x_at | ESTs | 1651.68 | 566.67 | 2344.63 |
| 218400_at | 2'-5'-oligoadenylate synthetase 3 | 1914.27 | 2042.07 | 1695.06 |
| 219011_at | pleckstrin homology domain | 33.03 | 216.27 | 462.15 |
| 219364_at | likely ortholog of mouse D11lgp2 | 23.39 | 211.10 | 828.68 |
| 219593_at | peptide transporter 3 | 678.07 | 754.28 | 1005.54 |
| 219684_at | 28 kD interferon responsive protein | 678.29 | 651.96 | 792.34 |
| 219691_at | hypothetical protein FLJ20073 | 1761.43 | 914.96 | 1068.37 |
| 219863_at | cyclin-E binding protein 1 | 2191.56 | 1844.42 | 2329.30 |
| 220104_at | likely ortholog of rat zinc-finger antiviral protein | 500.61 | 427.62 | 547.91 |
| 221087_s_at | apolipoprotein L, 3 | 1873.08 | 1325.73 | 1547.18 |
| 221371_at | tumor necrosis factor member 18 | 787.94 | 1269.50 | 821.30 |
| 221653_x_at | apolipoprotein L, 2 | 520.21 | 609.52 | 1495.00 |