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. Author manuscript; available in PMC: 2008 Dec 5.
Published in final edited form as: J Cell Biochem. 2008 Sep 1;105(1):108–120. doi: 10.1002/jcb.21803

TABLE I. Intracellular distribution of 35S-proteoglycans in corneal fibroblasts.

Corneal fibroblasts were plated at 15,000 cells/cm2 on fibronectin coated plates in serum free medium [Hsia et al., 2003; Richardson et al., 2001] and allowed to incubate for 16h at 37°C. 35SO4 (100 μCi/mL) was added and the cells allowed to incubate for an additional 24 h at 37°C. The 35SO4-labeled cells were suspended with trypsin and ruptured by hypotonic shock and with NP-40. Cell extracts were separated into cytoplasmic and nuclear fractions as described in Experimental Procedures. Samples were subjected to cationic nylon filtration to separate 35S-proteoglycan from unincorporated 35SO4. Duplicate filters were subjected to nitrous acid treatment [Rapraeger and Yeaman, 1989]. 35S-heparan sulfate was calculated by subtracting the nitrous acid resistant 35S-proteogylcan (non-HSPG) from the total PG. Intracellular PG represented ~40% of the total cell-associated PG in these cells, and isolation and quantitation of cell-associated PG generated ~1.5 μg PG/106 cells (based on total GAG using the DMB assay [Farndale et al., 1986]). Hence, estimates of cytoplasmic and nuclear PG levels (μg/106 cells) were calculated as: 1.5*0.4*(relative amount in each fraction).

Fraction Total PG/106 cells Non-HSPG/106 cells HSPG/106 cells
CPM μg CPM μg CPM μg
Cytoplasmic 87,318 ± 1,323 0.517 26,800 ± 2,723 0.159 60,518 0.358
Nuclear 14,044 ± 1,025 0.083 4,185 ± 68 0.025 9,859 0.058