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. Author manuscript; available in PMC: 2009 Feb 1.
Published in final edited form as: Hypertens Res. 2008 Aug;31(8):1651–1657. doi: 10.1291/hypres.31.1651

Table 2.

Associations between the ROCK2 haplotypes from LD blocks 1 and 2 and the risk of hypertension. LD blocks were identified with Haploview program and sequences indicate the nucleotides for SNP 1 – 7 in block 1 and SNPs 8 – 17 in block 2 (see Figure 1 and Supplemental Table II for details). ‘LAMP free’ and ‘LAMP rec.’ indicate p-values from unrestricted and recessive models of the LAMP program, respectively. Column “freq.” indicates the frequency of a given haplotype allele in the HYPGENE cohort.

Block 1
Block 2
Haplo Sequence freq. LAMP free LAMP rec. Haplo Sequence freq. LAMP free LAMP rec.
1_1 AAAAATA 0.477 0.7 0.4 2_1 GGGAGAATGG 0.479 0.4 0.3
1_2 AGACTAG 0.216 0.4 0.2 2_2 AGGGAAGAGG 0.162 0.4 0.2
1_3 AGACTTA 0.139 0.012 0.003* 2_3 AGCAGCAAAA 0.128 0.008 0.002*
1_4 GGACTAG 0.064 0.5 0.7 2_4 GGGAAAGAGG 0.064 0.5 0.7
1_5 AGGCTAA 0.056 0.3 0.13 2_5 AGGAGAGAGG 0.057 0.3 0.14
1_6 AGAAATA 0.043 0.5 0.2 2_6 AAGGAAGAGG 0.053 0.9 0.7
2_7 AGGAGAAAGA 0.05 0.3 0.14
*

False discovery rate: q = 0.02