Table 2.
Associations between the ROCK2 haplotypes from LD blocks 1 and 2 and the risk of hypertension. LD blocks were identified with Haploview program and sequences indicate the nucleotides for SNP 1 – 7 in block 1 and SNPs 8 – 17 in block 2 (see Figure 1 and Supplemental Table II for details). ‘LAMP free’ and ‘LAMP rec.’ indicate p-values from unrestricted and recessive models of the LAMP program, respectively. Column “freq.” indicates the frequency of a given haplotype allele in the HYPGENE cohort.
| Block 1
|
Block 2
|
||||||||
|---|---|---|---|---|---|---|---|---|---|
| Haplo | Sequence | freq. | LAMP free | LAMP rec. | Haplo | Sequence | freq. | LAMP free | LAMP rec. |
| 1_1 | AAAAATA | 0.477 | 0.7 | 0.4 | 2_1 | GGGAGAATGG | 0.479 | 0.4 | 0.3 |
| 1_2 | AGACTAG | 0.216 | 0.4 | 0.2 | 2_2 | AGGGAAGAGG | 0.162 | 0.4 | 0.2 |
| 1_3 | AGACTTA | 0.139 | 0.012 | 0.003* | 2_3 | AGCAGCAAAA | 0.128 | 0.008 | 0.002* |
| 1_4 | GGACTAG | 0.064 | 0.5 | 0.7 | 2_4 | GGGAAAGAGG | 0.064 | 0.5 | 0.7 |
| 1_5 | AGGCTAA | 0.056 | 0.3 | 0.13 | 2_5 | AGGAGAGAGG | 0.057 | 0.3 | 0.14 |
| 1_6 | AGAAATA | 0.043 | 0.5 | 0.2 | 2_6 | AAGGAAGAGG | 0.053 | 0.9 | 0.7 |
| 2_7 | AGGAGAAAGA | 0.05 | 0.3 | 0.14 | |||||
False discovery rate: q = 0.02