Skip to main content
. Author manuscript; available in PMC: 2008 Dec 7.
Published in final edited form as: Genet Epidemiol. 2005 Dec;29(4):353–364. doi: 10.1002/gepi.20092

Table 2.

Outputs of FSA(λ) with various weight parameter valuesa for the 20-SNP dataset.

FSA(0) FSA(.3) FSA(.5)
Iter SNP HD RSQ PDE SNP HD RSQ PDE SNP HD RSQ PDE
1 11 .304 .021 .498 11 .304 .021 .498 11 .304 .021 .498
2 1 .480 .112 .583 16 .469 .089 .581 17 .403 .029 .553
3 13 .581 .117 .723 13 .570 .089 .674 7 .469 .112 .583
4 17 .663 .123 .805 17 .657 .157 .854 13 .570 .290 .714
5 16 .737 .181 .896 7 .706 .642 .939 16 .706 .642 .939
6 18 .794 .452 .948 20 .769 .773 .967 20 .769 .773 .967
7 5 .828 .452 .948 1 .822 .773 .978 18 .796 .867 .967
8 20 .857 .452 .948 18 .849 .931 .980 1 .849 .931 .980
9 7 .884 .947 .981 5 .884 .947 .981 5 .884 .947 .981
10 19 .909 .959 .987 19 .909 .959 .987 19 .909 .959 .987
FSA(.8) FSA(1.0)
Iter SNP HD RSQ PDE SNP HD RSQ PDE
1 11 .304 .021 .498 11 .013 .021 .498
2 7 .372 .046 .540 7 .072 .046 .540
3 17 .469 .112 .583 17 .092 .112 .583
4 3 .570 .290 .714 13 .155 .290 .714
5 16 .706 .642 .939 16 .223 .642 .939
6 18 .748 .754 .947 18 .334 .754 .947
7 20 .796 .867 .967 20 .425 .867 .967
8 1 .849 .931 .980 1 .520 .931 .980
9 5 .884 .947 .981 14 .595 .931 .980
10 19 .909 .959 .987 5 .648 .947 .981
a

For λ < 1, the stopping rule was only based on the HD values.

For λ = 1, on the other hand, only the ER criterion was used, and thus no HD values were available.