Table 4.
Dali search and structure comparison (39) using the structure of M. jannaschii PurP (2R7K) as the reference. Structures of hypothetical proteins or Z score below 10.0 are not included.
| Structure | PDB ID | Za | r.m.s.db | Aligned residues | % Identity |
|---|---|---|---|---|---|
| PfPurP (closed) | 2R87 | 42.3 | 1.4 | 322 | 50 |
| PfPurP (open) | 2R84 | 40.0 | 2.2 | 319 | 50 |
| TkPurP (unknown function) | 2PBZ | 34.9 | 1.7 | 287 | 36 |
| PurD | 1GSO | 19.8 | 3.5 | 282 | 11 |
| PurT | 1EZ1 | 19.5 | 3.7 | 269 | 14 |
| Carbamoyl phosphate synthetase | 1KEE | 18.4 | 4.1 | 270 | 16 |
| Biotin carboxylase | 1BNC | 17.9 | 5.2 | 270 | 15 |
| PurK | 1B6R | 17.1 | 3.1 | 244 | 11 |
| D-Ala-D-Ala ligase | 1IOW | 14.4 | 3.8 | 250 | 14 |
| Glutathione synthetase | 1GSA | 14.3 | 3.5 | 247 | 13 |
| Lysine biosynthesis enzyme Lysx | 1UC8 | 13.9 | 3.2 | 226 | 12 |
| Synapsin Ia fragment | 1AUV | 13.3 | 3.5 | 236 | 11 |
| inositol 1,3,4-triphosphate 5/6 kinase | 1Z2N | 12.5 | 3.9 | 232 | 10 |
a
Z, strength of structural similarity in standard deviations above expected.
b
r.m.s.d., root mean square deviation.