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. Author manuscript; available in PMC: 2008 Dec 18.
Published in final edited form as: Biochemistry. 2008 Oct 21;47(46):12118–12125. doi: 10.1021/bi8011548

Table 1.

DNA substrates used for Kinetic assays.

Substrate Sequence
CII 5′ TTGCGACTTATCAACGCCCACA AGCTGTCTTCTCAGTTTC 3′
3 ′ AACGCTGAATAGTTGCGGGTGTAGTCATCGACAGAAGAGTCAAAG 5′
CII5T 5′ TTGCGACTTATCAACGCCCACAX GCTGTCTTCTCAGTTTC 3′
3′ AACGCTGAATAGTTGCGGGTGTAGTCATCGACAGAAGAGTCAAAG 5′
CII5C 5′ TTGCGACTTATCAACGCCCACAX GCTGTCTTCTCAGTTTC 3′
3′ AACGCTGAATAGTTGCGGGTGTAGCCACCGACAGAAGAGTCAAAG 5′
45AG5 5′ GCCTCGCAGCCGTCCAACCAAY CTCGATCCAATGCCGTCC 3′
3′ CGGAGCGTCGGCAGGTTGGTTGAGTTGGAGCTAGGTTACGGCAGG 5′

X=T for correct paired termini and A for mispaired termini; Y= C for correct pair and G for mispaired end. The templating base is underlined.