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. Author manuscript; available in PMC: 2009 Apr 1.
Published in final edited form as: Hum Mutat. 2008 Oct;29(10):1181–1193. doi: 10.1002/humu.20767

TABLE 3.

Detection of Gene Conversion Tracts from Aligned Sequences of hGH/CSH Genes Using SNPs as Markers

Haplotype
Gene Conversion
tract length (bp)
Gene Variant Frequency Sequencea Min Max
GH2 common 98% −322 G…C −318 5 72
acceptor 0.7% C…A
CSHL1 Donor 100% C…A
CSH1 common 96.6% +1086 C… …T… …T… …A… …T… …A +1228 142 302
acceptor 1.35% A… …C… …G… …C… …C… …G
CSH2 Donor 100% A… …C… …G… …C… …C… …G
GH1 common 89.2% −435 G…………A −422 14 33
acceptor 1.35% A…………G
All others Donor 100% A…………G
GH1 common 50% −68 A….A −63 6 95
acceptor 7.43% G….T
CSH2/CSH1 Donor 100%/99.3% G….T
GH1 common 81.8% −63 A..G −60 4 63
acceptor 4.05% C..C
CSHL1 Donor 100% C..C
GH1 common 83.1% −370 G……G −363 8 60
acceptor 15.5% T……T
GH2 Donor 100% T……T
GH1 common 97.3% +410 C.T +412 3 23
acceptor 2.03% A.A
GH2 Donor 100% A.A
CSHL1 common 99.3% +944 CC…A +949 6 79
acceptor 0.68% TG…G
CSH1/CSH2 Donor 100% TG…G
a

location of a gene conversion tract on genomic sequence relative to the position of ATG of the acceptor gene; A denotes +1.