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. 2008 Feb;14(2):222–230. doi: 10.3201/eid1402.070457

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This is a publication of the U.S. Government. This publication is in the public domain and is therefore without copyright. All text from this work may be reprinted freely. Use of these materials should be properly cited.

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Phylogenetic analysis of full genome nucleotide sequences of lineage 1 and 2 strains of West Nile virus. The tree was constructed by using MEGA version 3.1 (13) with the neighbor-joining method and Kimura 2-parameter distance matrix. A bootstrap confidence level of 1,000 replicates was used. South African strains sequenced in this study are indicated by a black circle. GenBank accession nos. are as follows: NY-385–99 clone 9317B (DO66423), NY-385–99 clone TVP-9376 (AY848697), NY 385–99 (DQ211652), NY-382–99 FLAM (AF196835), IS-98 STD (AF481864), Mexico-TM171–03 (AY660002), TX 2002 2, (DQ 164205), goose-Hungary/03 (DQ 118127), Eg 101 (AF 260968), RO97–50 (AF260969), Morocco 96–111 (AY701412), Italy 1998-Eq (AF 404757), KN3829 (AY262283), LEIV-Vlg00–27924 (AY278442), PaH001 (AY268133), Ast02–2-696 (DQ411035), MRM61C (KUN) (D00246), IND804994H (DQ 256376), AnMg798 (DQ 176636), SA381/00 (EF429199), H442 (EF429200), goshawk-Hungary/04 (DQ 116961), SPU116/89 (EF429197), SA93/01 (EF429198), B956D117B3 (M12294), B956 (AY532665), ArD76104 (DQ 318019), Rabensburg isolate 97–103 (AY765264), LEIV-Krnd88–190 (AY277251), and M18370 JEV (M18370).