Table 2. Primers used to detect tet genes and conjugative transposon Tn916 in Streptococcus suis*.
Gene | Primers (5′ → 3′) | Product size, bp | Annealing temperature, °C |
---|---|---|---|
tetA | GCTACATCCTGCTTGCCTTC; CATAGATCGCCGTGAAGAGG | 210 | 55 |
tetB | TTGGTTAGGGGCAAGTTTTG; GTAATGGGCCAATAACACCG | 659 | 55 |
tetC | CTTGAGAGCCTTCAACCCAG; ATGGTCGTCATCTACCTGCC | 418 | 55 |
tetD | AAACCATTACGGCATTCTGC; GACCGGATACACCATCCATC | 787 | 55 |
tetE | AAACCACATCCTCCATACGC; AAATAGGCCACAACCGTCAG | 278 | 55 |
tetG | GCTCGGTGGTATCTCTGCTC; AGCAACAGAATCGGGAACAC | 468 | 55 |
tetK | TCGATAGGAACAGCAGTA; CAGCAGATCCTACTCCTT | 169 | 55 |
tetL | TCGTTAGCGTGCTGTCATTC; GTATCCCACCAATGTAGCCG | 267 | 55 |
tetM | GTGGACAAAGGTACAACGAG; CGGTAAAGTTCGTCACACAC | 406 | 55 |
tetO | AACTTAGGCATTCTGGCTCAC; TCCCACTGTTCCATATCGTCA | 515 | 55 |
tetQ | TTATACTTCCTCCGGCATCG; ATCGGTTCGAGAATGTCCAC | 904 | 55 |
tetS | CATAGACAAGCCGTTGACC; ATGTTTTTGGAACGCCAGAG | 667 | 55 |
ORF 24 | ATGAGGTGTCTATTTTTTTA; TTATTGGCTGAATGAATGTT | 120 | 52 |
ORF 23 | AATTTGTGATTCCCAACATG; CGTCAGCATGTAAAAGGTAA | 315 | 52 |
ORF 22 | ATGATGAGATTAGCAAATGG; CTATTTGTCTTGTGTCGGTT | 387 | 52 |
ORF 21 | TTTCATTTTACGATAGCGTC; GTCGCCTGCGTGGACTGTCT | 1,308 | 55 |
ORF 20 | ATGCTGTTTGATTATGTAAG; TTATTTTTTTGTTGTTATCA | 990 | 52 |
ORF 19 | ATGAATTTTGGACAAAACCT; TTAAGCACCAATAATGCGAT | 222 | 52 |
ORF 18 | TTTAGGCAAATACAATGAGG; GATTGGTTGAGATAAACGTT | 443 | 56 |
ORF 17 | ATGGGATTTTTGAAATCGTC; TTAATTGGATATGCCATAAA | 507 | 52 |
ORF 16 | ATGGCATATCCAATTAAATA; TTACACCTCTTTTCGCACAG | 2,448 | 52 |
ORF 15 | ATGTGAAACCATCAATAGTA; TCATCTGAAAATAAAATGGC | 2,265 | 52 |
ORF 14 | ATGAAGTTGAAAACTTTAGT; TCATTGTTTGATTCGTCCTG | 1,002 | 52 |
ORF 13 | AGAAAAACAGATACCAAAGG; CGTTCTTTTCAAGTACCAAA | 860 | 54 |
ORF 12-tetM | ATGCTTTGTATGCCTATGGT; CTAAGTTATTTTATTGAACA | 2022 | 54 |
ORF 5–10 | ATTATAAACTACAAGTGGAT; TTCGTTTAATCTGAATACGA | 2233 | 52 |
Xis-Tn | ATGAAGCAGACTGACATTCC; TTCGTTTAATCTGAATACGA | 204 | 52 |
Int-Tn | GACTGGAGAGAGCCAACGAA; CATCATGCCGTTGTAATCAC | 925 | 54 |
*tet, tetracycline; ORF, open reading frame.