Table 3.3. Effect of stretching on the lowest-frequency normal twisting mode and elastic modulus of a 100 bp generic DNA homopolymer*.
Coupled variables | r (Å) | (r - req)/req (%) | Y/Y0† | (cm-1) | C (10-19 erg-cm) |
---|---|---|---|---|---|
344.0 | 5.2 | 0.89 | 0.187 | 2.09 | |
Tilt-Roll | 343.9 | 5.2 | 0.89 | 0.187 | 2.09 |
Tilt-Twist | 344.0 | 5.2 | 0.89 | 0.188 | 2.12 |
Tilt-Shift | 344.0 | 5.2 | 0.89 | 0.187 | 2.09 |
Tilt-Slide | 344.0 | 5.2 | 0.89 | 0.187 | 2.09 |
Tilt-Rise | 343.8 | 5.2 | 0.91 | 0.187 | 2.09 |
Roll-Twist | 344.0 | 5.2 | 0.89 | 0.197 | 2.32 |
Roll-Shift | 344.0 | 5.2 | 0.89 | 0.187 | 2.09 |
Roll-Slide | 344.1 | 5.3 | 0.88 | 0.187 | 2.09 |
Roll-Rise | 345.0 | 5.5 | 0.78 | 0.188 | 2.10 |
Twist-Shift | 344.0 | 5.2 | 0.89 | 0.186 | 2.07 |
Twist-Slide | 344.0 | 5.2 | 0.89 | 0.184 | 2.04 |
Twist-Rise | 344.0 | 5.2 | 0.88 | 0.195 | 2.28 |
Shift-Slide | 343.9 | 5.2 | 0.90 | 0.187 | 2.09 |
Shift-Rise | 344.4 | 5.4 | 0.84 | 0.186 | 2.09 |
Slide-Rise | 343.2 | 5.0 | 0.98 | 0.185 | 2.08 |
Roll-Twist,Twist-Rise | 344.0 | 5.2 | 0.89 | 0.211 | 2.67 |
Twist-Slide,Twist-Rise | 344.0 | 5.2 | 0.89 | 0.197 | 2.32 |
Roll-Twist,Twist-Slide | 344.0 | 5.2 | 0.89 | 0.212 | 2.69 |
Roll-Twist,Twist-Slide,Twist-Rise | 344.0 | 5.2 | 0.88 | 0.224 | 3.01 |
Dimeric rest state: .
Young’s modulus, Y, of the restrained duplex with designated conformational properties compared to that, Y0, of the free, ideal DNA duplex without coupling.