Table 1.

Fungal genome sources

Species	Source	Nb proteins	Release or Date	Online database
Ashbya gossypii	AGD	4726	2.1	http://agd.vital-it.ch/index.html
Aspergillus fumigatus	NCBI	9923	06/30/2006	ftp://ftp.ncbi.nih.gov/genomes/Fungi/
Aspergillus nidulans	BROAD	10701	1	http://www.broad.mit.edu/annotation/fungi/fgi/
Aspergillus oryzae	NITE	12074	07/13/2006	http://www.nite.go.jp/index-e.html
Botrytis cinerea	BROAD	16448	1	http://www.broad.mit.edu/annotation/fungi/fgi/
Candida glabrata	NCBI	5181	07/05/2006	ftp://ftp.ncbi.nih.gov/genomes/Fungi/
Candida lusitaniae	BROAD	5941	1	http://www.broad.mit.edu/annotation/fungi/fgi/
Chaetomium globosum	BROAD	11124	1	http://www.broad.mit.edu/annotation/fungi/fgi/
Coccidioides immitis	BROAD	10457	2	http://www.broad.mit.edu/annotation/fungi/fgi/
Cryptococcus neoformans	NCBI	6475	07/30/2006	ftp://ftp.ncbi.nih.gov/genomes/Fungi/
Debaryomyces hansenii	NCBI	6317	07/30/2006	ftp://ftp.ncbi.nih.gov/genomes/Fungi/
Eremothecium gossypii	NCBI	4718	07/30/2006	ftp://ftp.ncbi.nih.gov/genomes/Fungi/
Fusarium graminearum	BROAD	11640	1	http://www.broad.mit.edu/annotation/fungi/fgi/
Kluyveromyces lactis	NCBI	5331	07/30/2006	ftp://ftp.ncbi.nih.gov/genomes/Fungi/
Magnaporthe grisea	BROAD	12841	5	http://www.broad.mit.edu/annotation/fungi/fgi/
Neurospora crassa	BROAD	10620	7	http://www.broad.mit.edu/annotation/fungi/fgi/
Phanerochaete chrysosporium	JGI	10048	2.1	http://genome.jgi-psf.org/
Rhizopus oryzae	BROAD	17467	3	http://www.broad.mit.edu/annotation/fungi/fgi/
Saccharomyces bayanus	MIT	9424	07/13/2006	ftp://genome-ftp.stanford.edu/pub/yeast/data_download/sequence/fungal_genomes/S_bayanus/MIT/
Saccharomyces castellii	WashU	4677	07/13/2006	ftp://genome-ftp.stanford.edu/pub/yeast/data_download/sequence/fungal_genomes/S_castellii/WashU/
Saccharomyces cerevisiae	NCBI	5869	07/30/2006	ftp://ftp.ncbi.nih.gov/genomes/Fungi/
Saccharomyces kluyveri	WashU	2968	07/13/2006	ftp://genome-ftp.stanford.edu/pub/yeast/data_download/sequence/fungal_genomes/S_kluyveri/WashU/
Saccharomyces kudriavzevi	WashU	3768	07/13/2006	ftp://genome-ftp.stanford.edu/pub/yeast/data_download/sequence/fungal_genomes/S_kudriavzevii/WashU/
Saccharomyces mikatae	MIT	9057	07/13/2006	ftp://genome-ftp.stanford.edu/pub/yeast/data_download/sequence/fungal_genomes/S_mikatae/MIT/
Saccharomyces paradoxus	MIT	8955	07/30/2006	ftp://genome-ftp.stanford.edu/pub/yeast/data_download/sequence/fungal_genomes/S_paradoxus/MIT/
Schizosaccharomyces pombe	NCBI	5045	07/30/2006	ftp://ftp.ncbi.nih.gov/genomes/Fungi/
Sclerotinia sclerotiorum	BROAD	14522	1	http://www.broad.mit.edu/annotation/fungi/fgi/
Stagonospora nodorum	BROAD	16597	1	http://www.broad.mit.edu/annotation/fungi/fgi/
Trchoderma reesei	JGI	9997	1.2	http://genome.jgi-psf.org/
Ustilago maydis	BROAD	6522	1	http://www.broad.mit.edu/annotation/fungi/fgi/
Yarrowia lipolytica	NCBI	6520	07/30/2006	ftp://ftp.ncbi.nih.gov/genomes/Fungi/