Table 3.
Ten highest ranking bacterial strains based on Mahalanobis distance and mean δ-distance for broad host range plasmid pB10 from an unknown host (%GC = 64.2)
Bacterial strain | Phylum | D2 | P(D2) | δ | P(δ) | %GC |
---|---|---|---|---|---|---|
Sorted by Mahalanobis distance | ||||||
Chromobacterium violaceum ATCC 12472 | Proteobacteria | 3.07 | 0.984 | 44.1 | 0.604 | 64.8 |
Ralstonia eutropha H16 | Proteobacteria | 6.05 | 0.923 | 69.6 | 0.133 | 66.5 |
Ralstonia solanacearum GMI1000 | Proteobacteria | 6.10 | 0.886 | 73.9 | 0.152 | 67.0 |
Azoarcus sp. EbN1 | Proteobacteria | 6.32 | 0.922 | 93.6 | 0.061 | 65.1 |
Bordetella petrii DSM 12804 | Proteobacteria | 6.44 | 0.902 | 66.0 | 0.226 | 65.5 |
Azoarcus sp. BH72 | Proteobacteria | 7.31 | 0.856 | 47.3 | 0.481 | 67.9 |
Dechloromonas aromatica RCB | Proteobacteria | 7.45 | 0.863 | 33.9 | 0.687 | 59.2 |
Acidovorax avenae subsp. citrulli AAC00-1 | Proteobacteria | 7.46 | 0.844 | 64.4 | 0.243 | 68.5 |
Bordetella bronchiseptica RB50 | Proteobacteria | 7.84 | 0.802 | 76.8 | 0.098 | 68.1 |
Xanthomonas campestris pv. vesicatoria str. 85-10 | Proteobacteria | 8.09 | 0.823 | 93.9 | 0.062 | 64.7 |
Sorted by δ-distance | ||||||
Dechloromonas aromatica RCB | Proteobacteria | 7.45 | 0.863 | 33.9 | 0.687 | 59.2 |
Renibacterium salmoninarum ATCC 33209 | Actinobacteria | 116.15 | 0.000 | 36.4 | 0.471 | 56.3 |
Pseudomonas fluorescens PfO-1 | Proteobacteria | 13.02 | 0.445 | 39.7 | 0.547 | 60.5 |
Chromobacterium violaceum ATCC 12472 | Proteobacteria | 3.07 | 0.984 | 44.1 | 0.604 | 64.8 |
Chlorobaculum parvum NCIB 8327 | Chlorobi | 44.06 | 0.037 | 44.1 | 0.379 | 55.8 |
Pseudomonas aeruginosa PAO1 | Proteobacteria | 10.74 | 0.657 | 44.1 | 0.482 | 66.6 |
Pseudomonas aeruginosa UCBPP-PA14 | Proteobacteria | 8.28 | 0.790 | 44.4 | 0.486 | 66.3 |
Pseudomonas syringae pv. syringae B728a | Proteobacteria | 30.23 | 0.065 | 46.5 | 0.369 | 59.2 |
Pseudomonas aeruginosa PA7 | Proteobacteria | 9.05 | 0.758 | 46.9 | 0.432 | 66.4 |
Hahella chejuensis KCTC 2396 | Proteobacteria | 31.08 | 0.077 | 47.0 | 0.353 | 53.9 |
D2, Mahalanobis distance; P(D2), P-value based on Mahalanobis distance; δ, δ-distance; P(δ), P-value based on δ-distance; %GC, genome G + C content defined as 100 × (G + C)/(A + T + G + C).
See Table 1 legend for explanation of P-values.