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. 2008 Oct 25;36(22):e147. doi: 10.1093/nar/gkn753

Table 3.

Ten highest ranking bacterial strains based on Mahalanobis distance and mean δ-distance for broad host range plasmid pB10 from an unknown host (%GC = 64.2)

Bacterial strain Phylum D2 P(D2) δ P(δ) %GC
Sorted by Mahalanobis distance
    Chromobacterium violaceum ATCC 12472 Proteobacteria 3.07 0.984 44.1 0.604 64.8
    Ralstonia eutropha H16 Proteobacteria 6.05 0.923 69.6 0.133 66.5
    Ralstonia solanacearum GMI1000 Proteobacteria 6.10 0.886 73.9 0.152 67.0
    Azoarcus sp. EbN1 Proteobacteria 6.32 0.922 93.6 0.061 65.1
    Bordetella petrii DSM 12804 Proteobacteria 6.44 0.902 66.0 0.226 65.5
    Azoarcus sp. BH72 Proteobacteria 7.31 0.856 47.3 0.481 67.9
    Dechloromonas aromatica RCB Proteobacteria 7.45 0.863 33.9 0.687 59.2
    Acidovorax avenae subsp. citrulli AAC00-1 Proteobacteria 7.46 0.844 64.4 0.243 68.5
    Bordetella bronchiseptica RB50 Proteobacteria 7.84 0.802 76.8 0.098 68.1
    Xanthomonas campestris pv. vesicatoria str. 85-10 Proteobacteria 8.09 0.823 93.9 0.062 64.7
Sorted by δ-distance
    Dechloromonas aromatica RCB Proteobacteria 7.45 0.863 33.9 0.687 59.2
    Renibacterium salmoninarum ATCC 33209 Actinobacteria 116.15 0.000 36.4 0.471 56.3
    Pseudomonas fluorescens PfO-1 Proteobacteria 13.02 0.445 39.7 0.547 60.5
    Chromobacterium violaceum ATCC 12472 Proteobacteria 3.07 0.984 44.1 0.604 64.8
    Chlorobaculum parvum NCIB 8327 Chlorobi 44.06 0.037 44.1 0.379 55.8
    Pseudomonas aeruginosa PAO1 Proteobacteria 10.74 0.657 44.1 0.482 66.6
    Pseudomonas aeruginosa UCBPP-PA14 Proteobacteria 8.28 0.790 44.4 0.486 66.3
    Pseudomonas syringae pv. syringae B728a Proteobacteria 30.23 0.065 46.5 0.369 59.2
    Pseudomonas aeruginosa PA7 Proteobacteria 9.05 0.758 46.9 0.432 66.4
    Hahella chejuensis KCTC 2396 Proteobacteria 31.08 0.077 47.0 0.353 53.9

D2, Mahalanobis distance; P(D2), P-value based on Mahalanobis distance; δ, δ-distance; P(δ), P-value based on δ-distance; %GC, genome G + C content defined as 100 × (G + C)/(A + T + G + C).

See Table 1 legend for explanation of P-values.