. Author manuscript; available in PMC: 2008 Dec 17.

Published in final edited form as: J Thorac Cardiovasc Surg. 2006 May;131(5):1045–1052. doi: 10.1016/j.jtcvs.2006.01.003

TABLE 2.

Single nucleotide polymorphism genotyping assay information

	Reporter
SNP	VIC^*	FAM^†	Context sequence^‡
−8202A/G	A	G	5′GCCCAGCCCAGCCTGCAGCCCTGGG[A/G]CTCTGCAGCAGCACAGTCAGAAATG 3′
IVS4+3G/T	G	T	5′GTGGTCCCTGGGCAAGGGCGTCGGT[G/T]AGATTCTGAGTCCTCCTGGCCCCTG 3′
2003A/G (Q668R)	A	G	5′GACACGCACGACGTCTTCCAGTACC[A/G]AGGTGAGGGCTGAGGAGGATCCCTT 3′

SNP, Single nucleotide polymorphiosm.

VIC dye used to label the TaqMan probe that detects the allele 1 sequence.

^†

FAM dye used to label the TaqMan probe that detects the allele 2 sequence.

^‡

Twenty-five nucleotides on both sides of the SNP site, which is indicated in brackets (ie, NNN[A1/A2]NNN, where A1 = allele 1 and A2 = allele 2).