Table 1.
Genes detected exclusively in roots of the tolerant genotype (Prata Ligeiro) SSH library
| Encoded protein | Homologous organism | Accession number |
| Proteins of known function | ||
| Glutamate-1-semialdehyde 2,1 aminomutase | Oryza sativa | NM_001068872 |
| Metallothionein-like protein | Oryza sativa | NM_001056317 |
| Malate dehydrogenase | Oryza sativa | NM_001062924 |
| Methionine sulfoxide reductase A | Oryza sativa | NM_001063272.1 |
| Phosphatidylinosytol 3 and 4 kinase | Oryza sativa | NM_001060732 |
| Ubiquitin-conjugating enzyme | Oryza sativa | NM_001048429 |
| Nuclear protein SET domain containing protein | Oryza sativa | NM_001067672 |
| Splicing factor 3B subunit 5-like protein | Oryza sativa | dbj|BAD10044.1| |
| PEP carboxikinase | Oryza sativa | gb|ABF95034.1| |
| Putative malate dehydrogenase | Oryza sativa | gb|AAT69584.1| |
| Eukaryotic translation initiation factor 5A-2 (eIF-5A) (eIF-4D) | Oryza sativa | NC_008405 |
| Metallothionein-like protein type 1 | Oryza sativa | NP_001068544.1 |
| ADP glucose pyrophosphorylase | Oryza sativa | EF122437 |
| CBL-interacting protein kinase 1 | Oryza sativa | NM_001049327 |
| ADP-ribosylation factor | Oryza sativa | NM_001051134 |
| DSS1/SEM1 family protein | Oryza sativa | NC_008394 |
| Ankyrin repeat containing protein | Oryza sativa | NM_001054582 |
| Pathogenesis-related transcriptional factor and ERF domain containing protein | Oryza sativa | NC_008402 |
| E-class P450, group I family protein | Oryza sativa | NM_001074239 |
| FAR1 domain containing protein | Oryza sativa | NM_001057341 |
| Tubulin alpha-1 chain | Oryza sativa | NM_001074145 |
| Putative ubiquitin conjugating enzyme | Oryza sativa | dbj|BAB89662.1| |
| DEAD/DEAH box helicase domain containing protein | Oryza sativa | NM_001069156 |
| Putative pollen specific protein C13 precursor | Oryza sativa | gb|AAM08621.1| |
| IQ calmodulin-binding | Oryza sativa | NM_001061046 |
| HAD superfamily hydrolase 5' nucleotidase protein | Oryza sativa | NM_001057956 |
| SAM biding motif domain containing protein | Oryza sativa | NM_001070787 |
| Peptidase aspartic family protein | Oryza sativa | NM_001063168 |
| Nonaspanin (TM9SF) family protein | Oryza sativa | NM_001056027 |
| Ethylene responsive element binding factor 5 | Oryza sativa | NM_001063579 |
| TMS membrane protein | Oryza sativa | NM_001054899 |
| Heat shock protein DnaJ family protein | Oryza sativa | NM_001060020 |
| Ferredoxin III, chloroplast precursor (Fd III) | Oryza sativa | NC_008396 |
| Anther ethylene-upregulated protein ER1 (Fragment) | Oryza sativa | NM_001055765 |
| Chaperone protein DNA-J-related like | Oryza sativa | dbj|BAD27799.1| |
| Isoflavone reductase family protein | Oryza sativa | NM_001068997 |
| U box domain containing protein | Oryza sativa | NM_001071339 |
| Ribossomal protein L | Curculio glandium | AM049038 |
| Short chain dehydrogenase tic32 | Oryza sativa | NM_001048577 |
| Arabinogalactan protein | Oryza sativa | NC_008394 |
| Ribonuclease T2 family protein | Oryza sativa | NM_001070328 |
| HvB12D protein (B12Dg1 protein) | Oryza sativa | NM_001063815 |
| Respiratory burst oxidase homolog | Oryza sativa | NM_001049555 |
| Phosphatidylinositol-4-phosphate 5-kinase family protein | Oryza sativa | NM_001068386 |
| Nodulin-like | Oryza sativa | NM_001070322 |
| Cathepsin B-like cysteine protease form 2 | Ixodes ricinus | gb|ABO26563.1| |
| Cathepsin L-like cysteine proteinase precursor | Acanthoscelides obtectus | gb|AAQ22984.1| |
| Calcium-transporting ATPase/calmodulin binding | Arabidopsis thaliana | NP_188931.1 |
| Myb, DNA biding domain containing protein | Oryza sativa | NM_001062445 |
| TGA-type basic leucine zipper protein | Phaseolus vulgaris | gb|AF402607.1| |
| Tocopherol O-methyltransferase, choroplast precursor | Oryza sativa | NM_001054379 |
| ATP-dependent Clp protease ATPbiding subunit Clpx-like mitochondrial precursor | Oryza sativa | dbj|BAD15818.1| |
| HvB12D protein (B12Dg1 protein) | Oryza sativa | NM_001063815 |
| Uncharacterized protein family containing protein | Oryza sativa | gb|ABA91393.1| |
| Protein of unknown function | ||
| Protein of unknown function | Oryza sativa | NC_008397 |
| Protein of unknown function | Oryza sativa | NC_008403 |
| Unknow function | Oryza sativa | NM_001067277 |
| Hypothetical protein | Oryza sativa | AP008208 |
| Hypothetical protein | Oryza sativa | gb|EAY93896.1| |
| Conserved hypothetical protein | Oryza sativa | NM_001065538 |
| Hypothetical protein | Oryza sativa | gb|EAY84091.1| |
| Hypothetical protein | Oryza sativa | CT836006 |
| Hypothetical protein | Oryza sativa | NC_008394.1 |
| Hypothetical protein | Oryza sativa | NC_008394.1 |
| Hypothetical protein | Oryza sativa | AP008208 |
| Hypothetical protein | Oryza sativa | NM_001057688 |
| Hypothetical protein | Oryza sativa | NM_001066910 |
| Hypothetical protein | Oryza sativa | NM_001053573 |
| Hypothetical protein | Oryza sativa | CT829595 |
| Hypothetical protein | Oryza sativa | CT834076 |