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. Author manuscript; available in PMC: 2008 Dec 18.
Published in final edited form as: J Mol Biol. 2007 Aug 22;373(3):801–810. doi: 10.1016/j.jmb.2007.08.036

Table 3.

Description of the dataset.

Code Description No. of subgroups No. of subgroup specific site No. of Family member Avg. sequence identity (%)
cd00120 MADS: MCM1, Agamous, Deficiens, and SRF box family. 2 3 90 12
cd00264 Bactericidal permeability-increasing protein, lipopolysaccharide-binding protein and cholesteryl ester transfer protein domains 2 3 31 8
cd00333 Major intrinsic protein (MIP) family 2 12 27 20
cd00363 Phosphofructokinase 2 6 11 35
cd00365 Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase 2 10 30 24
cd00423 Pterin binding enzymes 2 4 33 16
cd00985 Maf_Ham1 family 2 3 180 17
Gprotein G protein alpha subunit 11 7 105 47
GST Glutathione S-transferase family 11 9 107 20
LacI LacI/PurR family 15 12 54 27
Ricin RICIN domain family 3 21 47 37
CNMyc C and N terminal domain of Myc family 2 11 34 60
CBM9 Family 9 carbohydrate-binding module 2 7 19 37