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. 2008 Dec 26;283(52):36290–36299. doi: 10.1074/jbc.M804702200

TABLE 1.

The secondary structure contents (SSC) estimated from the CD spectra of native and dialysis-renatured MfpA

Fractionsa
NAAb(x-ray)
Native MfpA
Dialysis-renatured MfpA
Fractionc RMSDd NRMSDd NAAb(CD) Fraction RMSD NRMSD NAA (CD)
Htotal 16 0.035 0.033 0.681 1–12 0.152 0.039 0.249 21–35
Stotal 40 0.188 0.096 0.454 17–52 0.317 0.008 0.027 57–59
Turns 40 0.221 0.026 0.118 36–45 0.216 0.011 0.049 38–42
Unordered 87 0.574 0.179 0.298 72–138 0.312 0.039 0.125 50–64
Overalle 0.104 0.307 0.029 0.11
a

Secondary structure types: Htotal, total helixes, Stotal, total strands, Turns, turns; Unordered, the remainder of the protein

b

Number of amino acids included in the given type the secondary structure calculated from DSSP assignment of the crystal structure, NAA (x-ray) or from the CD spectra of MfpA, NAA (CD)

c

Calculated fraction of each secondary structure type

d

The values of r.m.s.d. and n.r.m.s.d. in this table reflect the analysis of the CD spectrum by the different programs and protein reference sets as described under “Experimental Procedures”

e

The overall performance of the CD analysis determined by considering all secondary structures collectively