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. 2007 Dec 4;1:33–42. doi: 10.2174/1874091X00701010033

Table 1.

GC Content of Coding and Intergenic Regions in the HSV-1 Genome

Coding Region Intergenic Region (rightward) Coding Region Intergenic Region (rightward)
Gene Length (bp) GC Length (bp) %GCa Gene Length (bp) %GC Length (bp) %GC
RL1 747 82.9 1003 68.1 UL36 9495 71.3 170 60.6
RL2 (ex 2) 1604 77.2 5588 67.8 UL37 3373 69.3 448 68.3
UL1 675 58.1 Overlap UL38 1398 71.3 517 61.5
UL2 1005 66.1 70 48.6 UL39 3414 65.7 70 74.3
UL3 708 63.4 160 46.3 UL40 1023 61.4 221 53.4
UL4 600 64.8 62 69.4 UL41 1470 62.7 477 62.7
UL5 2649 62.1 Overlap UL42 1526 66.8 111 55.0
UL6 2031 68.3 Overlap UL43 1305 72.4 280 62.1
UL7 890 66.1 200 55.0 UL44 1516 67.8 187 57.8
UL8 2253 70.4 238 72.7 UL45 519 68.6 247 56.7
UL9 2555 63.5 Overlap UL46 2157 71.1 84 67.9
UL10 1445 65.3 154 53.2 UL47 2082 73.1 492 63.2
UL11 291 66.6 Overlap UL48 1473 65.1 370 64.3
UL12 1881 68.5 60 66.7 UL49 906 70.5 Overlap
UL13 1557 64.0 Overlap UL49A 1276 68.9 18 50.0
UL14 660 65.9 106 73.6 UL50 1116 66.7 153 48.4
UL15 (ex 1) 1029 64.3 127 60.6 UL51 735 68.4 38 76.5
UL16 1122 68.3 92 81.5 UL52 3177 66.1 Overlap
UL17 2112 70.1 139 66.2 UL53 1017 61.1 540 64.6
UL15 (ex 2) 1179 61.5 283 56.5 UL54 1539 69.3 225 60.0
UL18 957 65.5 354 68.1 UL55 561 62.4 166 50.6
UL19 4125 68.5 293 68.6 UL56 705 66.2 3766 68.3
UL20 669 61.3 587 60.3 RL2 1604 77.2 1003 68.1
UL21 1622 66.0 172 60.5 RL1 747 82.9 1375 77.3
UL22 2517 66.7 291 60.8 RS1 3897 81.4 1537 74.6
UL23 1304 63.5 Overlap US1 1297 64.9 94 61.7
UL24 1008 64.6 70 51.4 US2 876 64.3 295 65.1
UL25 1743 68.0 255 60.0 US3 1446 63.6 78 61.5
UL26 1908 71.4 343 47.8 US4 717 63.7 272 59.6
UL27 3023 66.5 9 77.7 US5 279 65.9 411 58.6
UL28 2358 69.7 305 66.6 US6 1185 64.3 183 60.6
UL29 3591 67.3 755 63.3 US7 1173 65.6 287 56.1
UL30 3708 65.8 Overlap US8 1653 66.5 419 69.2
UL31 921 65.6 Overlap US9 273 63.0 573 57.1
UL32 1791 68.0 Overlap US10 939 67.3 Overlap
UL33 393 67.9 81 70.4 US11 486 67.3 66 68.2
UL34 828 67.1 107 67.3 US12 267 65.5 1549 75.1
UL35 339 65.8 146 48.6 RS1 3897 81.4 1261 78.5
a

Intergenic regions with reduced GC content are highlighted. Others are in the genome-like group.