Table 3.
Intergenic Region |
Local GC minb |
CACACA | TTAAAA |
---|---|---|---|
RL1-RL2 | No | No | Yes (2) |
RL2 (ex 2)-UL1 | Yes | Yes (2) | No |
UL4-UL5 | No | No | No |
UL8-UL9 | No | No | No |
UL12-UL13 | No | No | No |
UL14-UL15 (ex 1) | No | No | No |
UL16-UL17 | No | No | No |
UL17-UL15 (ex 2) | No | No | No |
UL18-UL19 | No | No | No |
UL19-UL20 | No | Yes | No |
UL28-UL29 | No | Yes | No |
UL29-UL30 | Yes | No | No |
UL33-UL34 | No | No | No |
UL34-UL35 | No | Yes | No |
UL37-UL38 | No | No | No |
UL39-UL40 | No | No | No |
UL41-UL42 | Yes | No | No |
UL43-UL44 | Yes | Yes | No |
UL46-UL47 | No | No | No |
UL47-UL48 | Yes | Yes | No |
UL48-UL49 | No | No | No |
UL51-UL52 | No | No | No |
UL53-UL54 | No | No | No |
UL56-RL2 | Yes | No | No |
RS1-US1 | Yes | No | No |
US2-US3 | No | No | Yes |
US8-US9 | No | Yes | Yes |
US11-US12 | No | No | No |
US12-RS1 | Yes | No | No |
Total | 8 | 8 | 4 |
Total per 10,000 bp | 4.1 | 4.1 | 2.0 |
Intergenic regions with genome-like GC content are those with GC contents in the range of 62.1%-81.5%.
Local GC minima are those identified by visual inspection of the GC content trace as defined in a sliding 120 bp window as shown in Fig. (4).