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. 2007 Dec 4;1:33–42. doi: 10.2174/1874091X00701010033

Table 4.

Intergenic Regions with Reduced GC Contentaa

Intergenic Region Local GC Minb CACACA TTAAAA
UL2-UL3 Yes No No
UL3-UL4 Yes No No
UL7-UL8 No Yes No
UL10-UL11 Yes Yes Yes (2)
UL15 (ex 1)-UL16 No Yes (2) No
UL15 (ex 2)-UL18 Yes Yes No
UL20-UL21 Yes No No
UL21-UL22 No No No
UL22-UL23 Yes No No
UL24-UL25 Yes No No
UL25-UL26 No No No
UL26-UL27 Yes Yes (3) Yes
UL35-UL36 Yes No Yes
UL36-UL37 No No No
UL38-UL39 Yes Yes No
UL40-UL41 No No No
UL42-UL43 Yes Yes (2) No
UL44-UL45 Yes No Yes
UL45-UL46 Yes Yes No
UL50-UL51 Yes Yes No
UL54-UL55 No No No
UL55-UL56 Yes Yes No
US1-US2 Yes No No
US3-US4 No No No
US4-US5 No Yes No
US5-US6 Yes Yes Yes
US6-US7 No No No
US7-US8 Yes No No
US9-US10 Yes No No
Total 19 16 6
Total per 10,000 bp 28.4 23.9 9.0
a

Intergenic regions with reduced GC content are those with GC contents in the range of 46.3%-61.7%.

b

Local GC minima are those identified by visual inspection of the GC content trace as defined in a sliding 120 bp window as shown in Fig. (4).