Table 4.
Intergenic Region | Local GC Minb | CACACA | TTAAAA |
---|---|---|---|
UL2-UL3 | Yes | No | No |
UL3-UL4 | Yes | No | No |
UL7-UL8 | No | Yes | No |
UL10-UL11 | Yes | Yes | Yes (2) |
UL15 (ex 1)-UL16 | No | Yes (2) | No |
UL15 (ex 2)-UL18 | Yes | Yes | No |
UL20-UL21 | Yes | No | No |
UL21-UL22 | No | No | No |
UL22-UL23 | Yes | No | No |
UL24-UL25 | Yes | No | No |
UL25-UL26 | No | No | No |
UL26-UL27 | Yes | Yes (3) | Yes |
UL35-UL36 | Yes | No | Yes |
UL36-UL37 | No | No | No |
UL38-UL39 | Yes | Yes | No |
UL40-UL41 | No | No | No |
UL42-UL43 | Yes | Yes (2) | No |
UL44-UL45 | Yes | No | Yes |
UL45-UL46 | Yes | Yes | No |
UL50-UL51 | Yes | Yes | No |
UL54-UL55 | No | No | No |
UL55-UL56 | Yes | Yes | No |
US1-US2 | Yes | No | No |
US3-US4 | No | No | No |
US4-US5 | No | Yes | No |
US5-US6 | Yes | Yes | Yes |
US6-US7 | No | No | No |
US7-US8 | Yes | No | No |
US9-US10 | Yes | No | No |
Total | 19 | 16 | 6 |
Total per 10,000 bp | 28.4 | 23.9 | 9.0 |
Intergenic regions with reduced GC content are those with GC contents in the range of 46.3%-61.7%.
Local GC minima are those identified by visual inspection of the GC content trace as defined in a sliding 120 bp window as shown in Fig. (4).