TABLE 2.

M. sedula genome loci responding to ferrous iron and RISC

Cluster	Msed ORF	Compared media	Fold change	Significancea (−log10P value)	Supplemental documentation
soxABCDD′Lb	0289	YKT vs YFS	13.9	16.4	Table S7
	0290		2.4	4.2
	0291		3.3	4.3
	0285		14.8	17.9
	0286		4.9	12.1
	0288		2.7	3.1
soxEFGHIM	0323	YFS vs YS	1.2	0.7	Table S8
	0322		1.5	1.4
	0321		3.0	10.5
	0320		1.6	9.1
	0319		1.1	0.6
	0324		1.8↓	2.2
foxAA′BCDEFGHIJc	0484	Y vs YFS	2.0↓	3.7	Table S8
	0485		14.9	10.6
	0480		2.1	3.5
	0478		1.5	1.1
	0477		1.0	0.0
	0475		1.2↓	0.8
	0474		1.4↓	1.6
	0469		1.3↓	3.0
	0468		1.5↓	8.8
	0473		1.6↓	7.4
soxNL-cbsABA	0500	YFS vs YKT	5.1	13.3	Table S8
	0501		1.2	0.6
	0502		1.7	6.7
	(1147)
	0502		2.6	7.1
	(1148)
	0503		2.0	7.8
	0504		6.4	11.3
tetH, sre reductase-like/dms reductase-like	0804	YKT vs Y	31.9	20.0	Tables S1, S3
	0812		13.5	13.3
	0814		8.2	12.1
	0815		9.9	16.3
	0816		3.4	12.8
	0817		2.6	8.4
	0818		1.6	2.9
hdrABC-like	1542	YKT vs YFS	5.5	7.0	Table S5
	1543		12.6	11.1
	1544		5.5	6.9
	1545		6.5	5.1
	1546		5.0	5.9
	1547		1.8	4.4
	1548		10.1	12.1
	1549		19.0	10.9
	1550		12.3	10.0
doxBCE	2030	YS vs YFS	1.5↓	2.0	Tables S7, S8
	2031		2.4	3.8
	2032		1.8↓	3.4

^aThe Bonferroni correction for this data set was 5.4.

^bsoxD′ (Msed0286) is the homolog of a gene encoding a small, previously unnamed polypeptide that purified with SoxABCD (see reference 35).

^cfoxA′ (Msed0485) is the second copy of foxA (Msed0484); only one copy was originally described in reference 5.