TABLE 3.

Single nucleotide polymorphism and haplotype variations among 173 L. monocytogenes isolates

Lineage(s)	Region	Positiona	Genes or locib	No. of SNPs	No. of haplotypes
II	VGCa	205,814-208,259	hly, mpl	43	28
II	VGCb	209,573-211,447	actA, plcB	92	25
II	LMO	325,093-327,031	lmo0298, lmo0299, lmo0300	160	26
II	INL	454,789-458,788	inlA, inlB	139	31
II	SIG	930,314-931,861	rsbV, rsbW, sigB,	16	14
II	PDH	1,079,263-1,081,952	pdhA, pdhB, pdhC	106	22
II	TRU	1,356,824-1,357,931	truB, ribC	202	18
II	AMI	1,553,548-1,555,355	ami, hisS	27	16
II	ACC	1,612,612-1,614,874	accD, dnaE	143	25
II	TRP	1,676,679-1,678,787	lmo1634	69	23
II	PUR	1,838,571-1,840,142	purN, purM, purF	237	24
II	ARO	1,998,007-1,999,495	tyrA, aroE, lmo1922	185	25
III & IV	VGC	203,659-212,465	prfA, plcA, hly, mpl, actA, plcB, lmo0206	876	42
III & IV	LMO	325,093-327,032	lmo0298, lmo0299, lmo0300	228	39
III & IV	INL	454,708-458,828	inlA, inlB	510	40

^aCorresponding nucleotide positions in the complete genome sequence of L. monocytogenes strain EGD-e (NC_003210).

^bGene designations follow the annotated EGD-e genome (NC_003210).