Table 1.
zones | domain | α-helix | AA range | AA numbera | KD indexb | Rose index |
---|---|---|---|---|---|---|
1 | E16–H105 | 90 | 29.1 | 66.14 | ||
IA | h2 | E16–L31 | 16 | 11.9 | 12.66 | |
h3 | P35–D56 | 22 | −2.7 | 16.04 | ||
h4 | S65–T76 | 12 | 3.5 | 9.04 | ||
h5 | A88–A92 | 5 | 5.1 | 3.92 | ||
h6 | E95–H105 | 11 | −17.7 | 7.81 | ||
2 | E208–E280 | 73 | −29.5 | 52.59 | ||
IIA | h2 | E208–F223 | 16 | −5.3 | 11.62 | |
h3 | E227–H247 | 21 | −1.3 | 15.56 | ||
h4 | L250–E266 | 17 | −0.9 | 12.49 | ||
h5 | L275–E280 | 6 | −2.1 | 4.43 | ||
3 | W341–V415 | 75 | −18.2 | 54.30 | ||
IIB | h3 | S342–A362 | 21 | 12.5 | 15.71 | |
h4 | D365–E383 | 19 | −14.4 | 13.56 | ||
IIIA | h1 | P384–L398 | 15 | −8.8 | 10.74 | |
h2 | Y401–V415 | 15 | −5.9 | 10.71 | ||
4 | A510–A582 | 73 | −31.6 | 50.52 | ||
IIIB | h1 | A510–T515 | 6 | 6.4 | 4.59 | |
h2 | E518–K536 | 19 | −23.1 | 12.86 | ||
h3 | E542–K560 | 19 | 0.9 | 13.88 | ||
h4 | E565–A582 | 18 | −1.4 | 12.80 |
The number of amino acids in the subdomains exceeds the sum of those in the α-helices owing to the presence of regular turns and random strands.
Kyte–Doolittle index, calculated as the sum of the values for the individual amino acids. A positive hydropathy value indicates hydrophobicity and a negative one hydrophilicity.