Skip to main content
. 2008 Oct 7;363(1512):4031–4039. doi: 10.1098/rstb.2008.0164

Table 3.

Bayesian posterior tree probabilities (%) for the small dataset. (1E means the default prior in mb (μ0=μ1=0.1), while 2E means the data size-dependent prior, with two exponential priors for the internal and external branch lengths (μ0μ1).)

JC HKY+Γ5 HKY+C+Γ5 codon.M0 mtmam mtmam5






tree 1E 2E 1E 2E 1E 2E 1E 2E 1E 2E 1E 2E
1 (A((FB)G)) 93 69 98 19 100 37 49 5 2 34 49
2 (G((FB)A)) 1 13 20 51 95 100 98 60 18
3 ((AG)(FB)) 1 15 23 6 33
4 (A(F(BG))) 7 31 6 2
5 (A((FG)B)) 5 2
6 ((BG)(FA)) 4 2
7 ((FG)(BA)) 4 1
8 (F((BA)G)) 5 1
9 (G((BA)F)) 4 2
10 (F((BG)A)) 4 1
11 (B((FA)G)) 4 2
12 (B(F(AG))) 4 1
13 (G((FA)B)) 4 2
14 (F(B(AG))) 4 1
15 (B((FG)A)) 4 1