Table 3.
Bayesian posterior tree probabilities (%) for the small dataset. (1E means the default prior in mb (μ0=μ1=0.1), while 2E means the data size-dependent prior, with two exponential priors for the internal and external branch lengths (μ0≠μ1).)
JC | HKY+Γ5 | HKY+C+Γ5 | codon.M0 | mtmam | mtmam+Γ5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
tree | 1E | 2E | 1E | 2E | 1E | 2E | 1E | 2E | 1E | 2E | 1E | 2E | |
1 | (A((FB)G)) | 93 | 69 | 98 | 19 | 100 | 37 | 49 | 5 | 2 | 34 | 49 | |
2 | (G((FB)A)) | 1 | 13 | 20 | 51 | 95 | 100 | 98 | 60 | 18 | |||
3 | ((AG)(FB)) | 1 | 15 | 23 | 6 | 33 | |||||||
4 | (A(F(BG))) | 7 | 31 | 6 | 2 | ||||||||
5 | (A((FG)B)) | 5 | 2 | ||||||||||
6 | ((BG)(FA)) | 4 | 2 | ||||||||||
7 | ((FG)(BA)) | 4 | 1 | ||||||||||
8 | (F((BA)G)) | 5 | 1 | ||||||||||
9 | (G((BA)F)) | 4 | 2 | ||||||||||
10 | (F((BG)A)) | 4 | 1 | ||||||||||
11 | (B((FA)G)) | 4 | 2 | ||||||||||
12 | (B(F(AG))) | 4 | 1 | ||||||||||
13 | (G((FA)B)) | 4 | 2 | ||||||||||
14 | (F(B(AG))) | 4 | 1 | ||||||||||
15 | (B((FG)A)) | 4 | 1 |