Table 4.

Bayesian posterior tree probabilities (%) for the large dataset.

τ		JC		HKY+Γ5		HKY+C+Γ5		codon.M0		mtmam		mtmam+Γ5
	tree	1E	2E	1E	2Ea	1E	2Ea	1E	2E	1E	2E	1E	2Ea
1	(A((FB)G))	100	99					5	1
2	(G((FB)A))									72	72	36	23+11+1
3	((AG)(FB))											1	1+1
4	(A(F(BG)))							93	97
5	(A((FG)B))		1	100	63+32+4	100	60+37+3	2	3
6	((BG)(FA))											1	1+1
7	((FG)(BA))
8	(F((BA)G))
9	(G((BA)F))									14	17	8	7+4
10	(F((BG)A))												1
11	(B((FA)G))
12	(B(F(AG)))
13	(G((FA)B))									14	11	52	33+16+1
14	(F(B(AG)))
15	(B((FG)A))

^aUnder the 2E prior and models HKY+Γ₅, HKY+C+Γ₅ and mtmam+Γ₅, the PPs shown are the sums of several tree topologies. See text for details, and also legend to table 3.