Table 1.
Integral difference between the branch length of the tree used to simulate sequences and the average estimated internal and external branch lengths. (Values given are estimates of the area between the simulated and inferred branch lengths. See §2 for details.)
| ω | ||||||
|---|---|---|---|---|---|---|
| 0.05 | 0.5 | 1.0 | ||||
| internal | external | internal | external | internal | external | |
| JC | −0.45 | −0.35 | −0.21 | −0.10 | −0.21 | −0.10 |
| HKY+Γ | −0.37 | −0.27 | −0.16 | −0.08 | −0.12 | −0.06 |
| MM | −0.23 | −0.18 | −0.09 | −0.05 | −0.09 | −0.05 |
| THMM | −0.21 | −0.16 | −0.07 | −0.05 | −0.07 | −0.04 |
| EQU | −0.05 | −0.03 | −0.19 | −0.09 | −0.28 | −0.20 |
| WAG+F+Γ | −0.01 | 0 | 0.07 | 0.06 | −0.12 | 0.10 |