Table 1.
Percent repetitive element content of reduced representation libraries.
| Library1 | Restriction Enzyme | Site | SINEs2 | LINEs | LTR | DNA | Total | Centromeric Repeats3 |
| GSS | Sheared | random | 11.30 | 16.14 | 2.80 | 1.51 | 31.75 | 0.00 |
| pRRL1 | Alu I | AG|CT | 10.21 | 15.63 | 2.46 | 3.16 | 31.46 | 0.00 |
| pRRL2 | Hae III | GG|CC | 13.19 | 11.33 | 3.11 | 1.79 | 29.42 | 0.00 |
| pRRL3 | BstU I | CG|CG | 1.98 | 0.40 | 0.03 | 0.42 | 2.83 | 23.83 |
| pRRL4 | Dra I | TTT|AAA | 32.04 | 4.85 | 1.67 | 1.09 | 39.65 | 0.00 |
| pRRL5 | Pvu II | CAG|CTG | 20.99 | 4.91 | 1.71 | 1.25 | 28.86 | 6.18 |
1 GSS refers to genome survey sequence and values were obtained from Wernersson et al., 2005 [14].
2 Values are given as percent of total. SINEs refers to short interspersed elements porcine SINE elements and MIRs; LINEs refers to LINE1, LINE 2, L3/CR1 and RTE elements; LTR refers to long terminal repeats MaLRs, and ERVL; DNA refers to MER1 and MER2-type elements. Total refers to percent of repetitive content identified by RepeatMasker.
3Values in the centromeric repeat column represent percent of sequences that contain a centromeric repeat and not percent of sequence content.