Table 3.
SSCa | Position (cM) | Traitb | F Valuec | Origind | ADD ± S.E.e | DOM ± S.E.e | IMP ± S.E.e | CI95f | Var%g | Nominal P |
1 | 46 | FL | 4.6* | Erhualian | -0.08 ± 0.03 | -0.10 ± 0.04 | ns | 34–152 | 1.1 | 3.3E-03 |
58 | SL | 5.8* | Duroc | ns | -0.24 ± 0.06 | ns | 0–113 | 1.5 | 6.7E-04 | |
146 | HL | 6.4* | Erhualian | -0.12 ± 0.03 | ns | ns | 27–153 | 1.9 | 2.6E-04 | |
147 | TL | 9.6*** | Erhualian | -0.16 ± 0.03 | ns | ns | 36–160 | 1.0 | 3.2E-06 | |
157 | UL | 9.0*** | Erhualian | -0.14 ± 0.03 | -0.11 ± 0.05 | ns | 146–160 | 2.4 | 6.8E-06 | |
2 | 17 | SL | 23.7*** | Duroc | 0.13 ± 0.04 | ns | 0.27 ± 0.04 | 0–23 | 5.4 | 9.7E-15 |
78 | HL | 4.7* | Duroc | ns | ns | -0.11 ± 0.03 | 0–144 | 1.0 | 3.0E-03 | |
3 | 40 | FL | 4.9* | Duroc | ns | -0.24 ± 0.07 | ns | 31–128 | 1.5 | 2.4E-03 |
114 | SL | 7.3** | Erhualian | -0.17 ± 0.04 | ns | ns | 31–123 | 1.0 | 8.3E-05 | |
4 | 58 | HL | 11.2*** | Duroc | 0.18 ± 0.03 | ns | ns | 46–85 | 1.5 | 3.2E-07 |
58 | UL | 20.5*** | Duroc | 0.26 ± 0.03 | ns | ns | 54–75 | 2.8 | 7.3E-13 | |
68 | FL | 5.5* | Duroc | 0.10 ± 0.03 | ns | ns | 3–109 | 4.5 | 9.2E-04 | |
98 | SL | 7.3** | Duroc | 0.16 ± 0.04 | ns | ns | 0–110 | 1.3 | 7.8E-05 | |
127 | fBMD | 4.9* | Erhualian | -0.04 ± 0.02 | -0.07 ± 0.03 | ns | 0–139 | 10.3 | 3.4E-03 | |
5 | 54 | SL | 5.4* | Erhualian | -0.13 ± 0.04 | ns | ns | 1–105 | 1.0 | 1.1E-03 |
64 | UL | 5.6* | Erhualian | -0.11 ± 0.03 | ns | ns | 8–112 | 1.1 | 7.8E-04 | |
7 | 57 | FL | 50.3*** | Erhualian | -0.41 ± 0.03 | ns | ns | 56–59 | 16.5 | 5.6E-30 |
57 | SL | 70.4*** | Erhualian | -0.59 ± 0.04 | ns | -0.06 ± 0.03 | 56–60 | 9.5 | 9.3E-41 | |
58 | HL | 35.6*** | Erhualian | -0.34 ± 0.03 | ns | ns | 55–59 | 19.9 | 1.1E-21 | |
58 | TL | 26.5*** | Erhualian | -0.29 ± 0.03 | ns | ns | 54–59 | 13.5 | 2.1E-16 | |
58 | UL | 87.1*** | Erhualian | -0.55 ± 0.03 | 0.09 ± 0.04 | ns | 57–60 | 7.0 | 2.9E-49 | |
10 | 41 | FL | 5.9* | Duroc | 0.12 ± 0.03 | ns | ns | 0–108 | 1.3 | 5.8E-04 |
11 | 106 | fBMD | 6.5* | Erhualian | -0.06 ± 0.02 | ns | ns | 36–106 | 14.7 | 4.9E-04 |
13 | 67 | TL | 10.9*** | Duroc | 0.16 ± 0.03 | ns | ns | 31–98 | 2.3 | 5.3E-07 |
72 | SL | 10.6*** | Duroc | 0.19 ± 0.03 | ns | ns | 40–93 | 4.0 | 7.5E-07 | |
72 | UL | 18.3*** | Duroc | 0.22 ± 0.03 | ns | -0.06 ± 0.03 | 60–96 | 2.7 | 1.7E-11 | |
14 | 36 | UL | 6.1* | Duroc | 0.11 ± 0.03 | ns | 0.07 ± 0.03 | 28–102 | 1.8 | 4.2E-04 |
51 | HL | 4.6* | Duroc | 0.12 ± 0.03 | ns | ns | 18–102 | 1.0 | 3.3E-03 | |
88 | SL | 8.4*** | Duroc | 0.16 ± 0.04 | ns | -0.12 ± 0.04 | 52–97 | 1.2 | 1.7E-05 | |
15 | 44 | TL | 6.4* | Erhualian | -0.14 ± 0.03 | ns | ns | 24–117 | 2.0 | 2.8E-04 |
63 | HL | 8.1** | Erhualian | -0.14 ± 0.03 | ns | ns | 30–74 | 1.5 | 2.4E-05 | |
56 | FL | 4.7* | Erhualian | -0.10 ± 0.03 | ns | ns | 7–114 | 1.0 | 3.1E-03 | |
X | 50 | SL | 11.4*** | Duroc | 0.17 ± 0.04 | ns | -0.14 ± 0.04 | 35–57 | 2.5 | 2.4E-07 |
51 | FL | 10.3*** | Duroc | 0.13 ± 0.03 | ns | -0.09± 0.03 | 48–60 | 4.5 | 1.1E-06 | |
52 | HL | 17.3*** | Duroc | 0.23 ± 0.03 | ns | ns | 43–59 | 2.4 | 6.5E-11 | |
52 | UL | 11.5*** | Duroc | 0.26 ± 0.05 | ns | ns | 45–60 | 2.6 | 2.2E-07 | |
53 | TL | 22.7*** | Duroc | 0.26 ± 0.03 | ns | 0.08 ± 0.03 | 24–84 | 5.9 | 3.6E-14 |
a Pig chromosome; b For abbreviations see Table 1; c Significance levels: * suggestive significant level, **5% genome-wide significant level, ***1% genome-wide significant level.; d Origin of favorable allele respect to the founder breed; e ns, insignificant ADD, DOM and IMP. f The 95% confidence interval;g Percentage of phenotype variance explained by the QTL.