Table 1.
Recently completed microbial genomes (May–July 2008).
| Species name | Taxonomy | GenBank accession | Genome size (bp) | Proteins (total) | Sequencing centrea | Reference |
|---|---|---|---|---|---|---|
| New organisms | ||||||
| Trichoderma reesei | Eukaryota, Fungi | AAIL00000000 | −34 Mbp | 9129 | JGI | Martinez et al. (2008) |
| Kocuria rhizophila | Actinobacteria | AP009152 | 2 697 540 | 2357 | NITE | Takarada et al. (2008) |
| Hydrogenobaculum sp. Y04AAS1 | Aquificae | CP001130 | 1 559 514 | 1629 | JGI | Unpublished |
| Sulfurihydrogenibium sp. YO3AOP1 | Aquificae | CP001080 | 1 838 442 | 1721 | JGI | Unpublished |
| Candidatus Amoebophilus asiaticus | Bacteroidetes | CP001102 | 1 884 364 | 1283 | JGI | Unpublished |
| Polaribacter sp. MED152 | Bacteroidetes | NZ_AANA00000000 | 2 967 150 | 2646 | JCVI | González et al. (2008) |
| Chlorobaculum parvum | Chlorobi | CP001099 | 2 289 249 | 2043 | JGI | Unpublished |
| Chlorobium limicola | Chlorobi | CP001097 | 2 763 181 | 2434 | JGI | Unpublished |
| Chloroherpeton thalassium | Chlorobi | CP001100 | 3 293 456 | 2710 | JGI | Unpublished |
| Pelodictyon phaeoclathratiforme | Chlorobi | CP001110 | 3 018 238 | 2707 | JGI | Unpublished |
| Prosthecochloris aestuarii | Chlorobi | CP001108 | 2 512 923 | 2327 | JGI | Unpublished |
| CP001109 | 66 772 | |||||
| Natranaerobius thermophilus | Firmicutes | CP001034 | 3165 557 | 2906 | JGI | Unpublished |
| CP001035 | 17 207 | |||||
| CP001036 | 8 689 | |||||
| Methylobacterium populi | α-Proteobacteria | CP001029 | 5 800 441 | 5365 | JGI | Unpublished |
| CP001030 | 25 164 | |||||
| CP001031 | 23 392 | |||||
| Oligotropha carboxidovorans | α-Proteobacteria | ABKN00000000 | 3 745 772 | 3754 | Mississippi State U. | Paul et al. (2008) |
| Wolbachia pipientis | α-Proteobacteria | AM999887 | 1 482 455 | 1275 | Sanger Institute | Klasson et al. (2008) |
| Ralstonia pickettii | β-Proteobacteria | CP001068 | 3 942 557 | 4952 | JGI | Unpublished |
| CP001069 | 1 302 238 | |||||
| CP001070 | 80 934 | |||||
| Cellvibrio japonicus | γ-Proteobacteria | CP000934 | 4 576 573 | 3754 | JCVI | DeBoy et al. (2008) |
| Erwinia tasmaniensis | γ-Proteobacteria | CU468128 | 4.07 (total) | 3622 | MPIMG | Kube et al. (2008) |
| CU468130–CU468135 | ||||||
| Proteus mirabilis | γ-Proteobacteria | AM942759 | 4 063 606 | 3685 | Sanger Institute | Pearson et al. (2008) |
| AM942760 | 36 289 | |||||
| Geobacter lovleyi | δ-Proteobacteria | CP001089 | 3 917 761 | 3476 | JGI | Unpublished |
| CP001090 | 77 113 | |||||
| Candidatus Phytoplasma mali | Tenericutes | CU469464 | 601 943 | 479 | MPIMG | Kube et al. (2008) |
| Mycoplasma arthritidis | Tenericutes | CP001047 | 820 453 | 631 | JCVI | Dybvig et al. (2008) |
| New strains | ||||||
| Bifidobacterium longum DJO10A | Actinobacteria | CP000605 | 2 375 792 | 2003 | JGI | Lee et al. (2008) |
| AF538868 | 10 073 | |||||
| AF538869 | 3 661 | |||||
| Chlorobium phaeobacteroidesBS1 | Chlorobi | CP001101 | 2 736 403 | 2469 | JGI | Unpublished |
| Lactobacillus caseiBL23 | Firmicutes | FM177140 | 3 079 196 | 3044 | INRA | Unpublished |
| Streptococcus pneumoniaeG54 | Firmicutes | CP001015 | 2 078 953 | 2115 | JCVI | Dopazo et al. (2001) |
| Rhizobium etli CIAT 652 | α-Proteobacteria | CP001074–CP001077 | 6.44 (total) | 6056 | UNAM | Unpublished |
| Rhodopseudomonas palustris TIE-1 | α-Proteobacteria | CP001096 | 5 744 041 | 5246 | JGI | Unpublished |
| Burkholderia cenocepaciaJ2315 | β-Proteobacteria | AM747720–AM747723 | 8.05 (total) | Sanger Institute | Unpublished | |
| Burkholderia multivorans ATCC 17616 | β-Proteobacteria | AP009385–AP009388 | 6.99 (total) | 6112 | Tohoku U. | Unpublished |
| Neisseria gonorrhoeaeNCCP11945 | β-Proteobacteria | CP001050 | 2 232 025 | 2674 | Korea NIH | Chung et al. (2008) |
| CP001051 | 4 153 | |||||
| Actinobacillus pleuropneumoniae serovar 7 str. AP76 | γ-Proteobacteria | CP001091–CP001094 | 2.34 (total) | 2142 | Bielefeld U. | Unpublished |
| Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 | γ-Proteobacteria | CP001120 | 4 888 768 | 4779 | JCVI | Unpublished |
| CP001118 | 91 374 | |||||
| CP001119 | 3 373 | |||||
| Salmonella enterica subsp. enterica serovar Newport str. SL254 | γ-Proteobacteria | CP001113 | 4 827 641 | 4805 | JCVI | Unpublished |
| CP000604 | 176 473 | |||||
| CP001112 | 3 605 | |||||
| Salmonella enterica subsp. enterica serovar | γ-Proteobacteria | CP001127 | 4 709 075 | 4627 | JCVI | Unpublished |
| Schwarzengrund str. CVM19633 | CP001125 | 110 227 | ||||
| CP001126 | 4 585 | |||||
| Stenotrophomonas maltophiliaR551-3 | γ-Proteobacteria | CP001111 | 4 573 969 | 4039 | JGI | Unpublished |
| Treponema pallidum subsp. pallidumSS14 | Spirochaetes | CP000805 | 1 139 457 | 1028 | Baylor | Matejkova et al. (2008) |
Sequencing centre names are abbreviated as follows: Baylor, Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA; Bielefeld U., Centrum für Biotechnologie, Universität Bielefeld, Bielefeld, Germany; INRA, Institut National de la Recherche Agronomique, Domaine de Vilvert, Jouy en Josas, France; JCVI, J. Craig Venter Institute, Rockville, Maryland, USA; JGI, US Department of Energy Joint Genome Institute, Walnut Creek, California, USA; Korea NIH, Center for Infectious Disease and Research, Korea National Institute of Health, Seoul, Korea; Mississippi State U., Mississippi State University, Mississippi State, Mississippi, USA; MPIMG, Max-Planck-Institute for Molecular Genetics, Berlin, Germany; NITE, Genome Analysis Center, Department of Biotechnology, National Institute of Technology and Evaluation, Shibuya-ku, Tokyo, Japan; Sanger Institute, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK; Tohoku U., Department of Environmental Life Sciences, Graduate School of Life Sciences, Sendai, Miyagi, Japan; UNAM, Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico, Cuernavaca, Mexico.