Table 3. Evaluation of the Association of Serum Lipid and Cholesterol Levels with Local Ancestry at 19 Lipid Loci Identified or Validated in Recent GWAS.

Trait	Gene	p-value
LDL	APOB	0.0031
	APOE	0.812
	HMGCR	0.858
	LDLR	0.843
	MVK	0.826
	NCAN	0.687
	PCSK9	0.365
	SORT1	0.475
	TRIB1	0.224
HDL	ABCA1	0.71
	APOA5	0.37
	CETP	0.65
	GALNT2	0.47
	LIPC	0.23
	LIPG	0.11
	LPL	0.012
	MLXIPL	0.75
	TRIB1	0.61
TG	ANGPTL3	0.81
	APOA5	0.86
	APOB	0.07
	GALNT2	0.37
	GCKR	0.013
	LPL	0.14
	MLXIPL	0.19
	NCAN	0.86
	TRIB1	0.83

Local ancestry values were estimated using ANCESTRYMAP and the strength of the association of local ancestry with each trait was evaluated by linear regression as in Table 2. Associations significant at the p<0.05 level are shown in bold.