Table 2. Amino acids in each pocket being critical for peptide-HLA groove interaction according to their electrostatic behavior.
Effect | P1 | P4 | P7 | P9 | |
Anchoring | Primary | α55E | α24F | - | - |
β81H | |||||
Secondary | α9Q | α71E | |||
α43W | β13R * | β28D | α76R | ||
β83Y | β26F | β61W | β9W | ||
β78Y | |||||
Recognition | Fine | - | β13R | β28D | - |
β26F | |||||
Coarse | α24F | α9Q | α72I | ||
α32F | β74A | β47F | α76R | ||
α43W | β78Y | β61W | β57D | ||
β85V |
Polymorphic positions are shown in bold-types.