Table 3.
Overview of the Selection Candidates
| Locus | Timing | lnRV | lnRH | Fst | LG | Result of Homology Search |
|---|---|---|---|---|---|---|
| c1666 | D | *** | *** | ** | 14 | AK117824.1 Arabidopsis putative Ser/Thr protein kinase |
| c5898 | D | *** | *** | * | 10 | NM_120482.2 Arabidopsis unknown protein |
| N21O05 | D | *** | ** | – | – | AF182079 Matricaria chamomilla thiol protease |
| c3115 | D | ** | ** | * | 12 | AY214336.1 Medicago truncatula nicotinate phosphoribosyltransferase-like protein |
| c4973 | D | ** | ** | – | – | NM_103779.4 Arabidopsis EMBRYO DEFECTIVE 1144; chorismate synthase |
| H4B03 | D | ** | ** | – | – | NM_120065.2 Arabidopsis kinesin-related protein (MKRP2) |
| c1533 | D | ** | ** | – | 7 | DQ661742.1 Populus tremula microtubule-associated protein (MAP20) |
| c0211 | D | * | *** | ** | 14 | NM_125464.2 Arabidopsis zinc finger (C3HC4-type RING finger) family protein |
| c1357 | D | * | *** | * | 16 | NM_117991.2 Arabidopsis pentatricopeptide repeat-containing protein |
| c2873a | D | * | ** | ** | 10b | DQ256293 Sesamum indicum 11S globulin precursor |
| c3113a | D | ** | – | ** | NA | DQ256293 S. indicum 11S globulin precursor |
| c0097 | D | *** | * | – | 5 | No significant similarity |
| c2963 | D | * | *** | – | 14 | AF406702.1 Solanum tuberosum BEL1-related homeotic protein 29 |
| M23M12 | D | * | ** | – | 3 | AY490253.1 Solanum lycopersicum CONSTANS 3 |
| N5M02 | D | * | ** | – | 7 | NM_102939 Arabidopsis secretory carrier membrane protein |
| G13K16 | D | *** | – | ** | 14 | NM_113590.3 Arabidopsis catalytic mRNA |
| c1649 | D | – | ** | * | 11 | NP_190988.1 Arabidopsis putative protein |
| G4G12 | D | – | ** | * | 13b | No significant similarity |
| B12L21 | D | * | – | ** | 10b | No significant similarity |
| c1700 | I | *** | *** | – | 10 | AM236862.1 Arabidopsis mitochondrial dicarboxylate carrier |
| c2150 | I | *** | *** | – | 9b | NP_175583.1 Arabidopsis NADP-specific glutatamate dehydrogenase |
| c1236 | I | ** | *** | – | 15 | NP_564307.1 Arabidopsis NSL1 (NECROTIC SPOTTED LESIONS1) |
| c1774 | I | *** | ** | – | 1 | No significant similarity |
| c1921 | I | *** | ** | – | 7 | DQ857278.1 Glycine max Dof27 |
| c0019 | I | *** | ** | – | 12 | NM_105746.3 Arabidopsis unknown protein |
| c2588 | I | *** | ** | – | 7 | NM_112234.2 Arabidopsis ATIDD11 (INDETERMINATE-DOMAIN11) |
| J22O06 | I | *** | ** | – | 11 | NM_124978.3 Arabidopsis unknown protein |
| c1144 | I | ** | ** | – | 3 | NM_118712.4 Arabidopsis calmodulin-binding protein |
| c1406 | I | ** | ** | – | 7 | AY395743.1 Vitis aestivalis protein kinase-like protein |
| c5666 | I | ** | ** | – | 14 | AY208699.1 Artemisia annua peroxidase 1 (POD1) |
| c3070 | I | * | *** | – | – | AB007819.1 Citrus unshiu gene for Gly-rich RNA binding protein |
| I3D18 | I | *** | * | – | – | No significant similarity |
| L2K11 | I | *** | * | – | 10 | NPL428214 Nicotiana plumbaginifolia mRNA for SDL-1 protein |
| c1258 | I | ** | * | – | 4 | AF091842 S. indicum strain Tainan 1 11S globulin precursor |
| J8F14 | I | * | ** | – | 10 | No significant similarity |
| M18F17 | I | – | ** | * | 1 | No significant similarity |
| N2K13 | I | ** | – | *** | 16 | NM_179410.3 Arabidopsis vacuolar protein sorting 55 family protein |
Information on the apparent timing of selection (D = domestication, I = improvement), results of the lnRV, lnRH, and FST tests, mapped LG, and the results of the homology search wherein the best nonsunflower BLAST hits are reported. Rows in bold indicate loci with P < 0.05 for both lnRV and lnRH. ***P < 0.01; **P < 0.05; *P < 0.1.
a
Two loci that correspond to the same gene.
b
A locus that was previously mapped in a different cross (see text for details).