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. 2008 Dec 8;9:528. doi: 10.1186/1471-2105-9-528

Table 3.

Gene-centered data sources for Gene Prospector.

Name URL
Gene-centered

 Entrez Gene http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene
 Ensembl Human http://www.ensembl.org/Homo_sapiens/index.html
 Swiss-Prot http://ca.expasy.org/sprot/
 AceView http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?human
 HuGE Navigator http://www.hugenavigator.net/HuGENavigator/startPagePedia.do
 OMIM http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim
 GeneCards® http://www.genecards.org/index.shtml
 Genetics Home Reference http://ghr.nlm.nih.gov/BrowseGenes
 SOURCE http://source.stanford.edu/cgi-bin/source/sourceSearch
 PubMed http://www.ncbi.nlm.nih.gov/sites/entrez/
Literature
 HuGE Navigator http://www.hugenavigator.net/HuGENavigator/startPagePubLit.do
 Genetic Association Database http://geneticassociationdb.nih.gov/
Pharmacogenetics
 PharmGKB http://www.pharmgkb.org/index.jsp
Variation/Prevalence
 dbSNP http://www.ncbi.nlm.nih.gov/sites/entrez
 dbSNP-Genotype http://www.ncbi.nlm.nih.gov/SNP/GeneGt.cgi?
 dbSNP-GeneView http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?locusId=
 ALFRED http://alfred.med.yale.edu/alfred/index.asp
 SNPper http://snpper.chip.org/bio/snpper-enter-gene
 Human Gene Mutation Database http://www.hgmd.cf.ac.uk/ac/index.php
 International HapMap Project http://snp.cshl.org/index.html
 The Cancer Genome Anatomy Project http://cgap.nci.nih.gov/
Pathway
 Kyoto Encyclopedia of Genes and Genomes http://www.genome.jp/kegg/genes.html
 BioCarta http://www.biocarta.com/genes/index.asp
 Pathway Interaction Database http://pid.nci.nih.gov/PID/index.shtml
Microarray
 NCBI Gene Expression Omnibus http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Search&db=geo&term
Miscellaneous
 NCBI Bookshelf http://www.ncbi.nlm.nih.gov/sites/entrez?db=books
 NCBI Gene Ontology Database http://www.geneontology.org/
 GeneTests http://www.geneclinics.org
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