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. Author manuscript; available in PMC: 2009 Dec 12.
Published in final edited form as: Structure. 2008 Dec 12;16(12):1817–1827. doi: 10.1016/j.str.2008.10.008

Table 2.

SAXS data statistics

Rg (Å)a Dmax (Å)b MMseq(kDa)c MMexp(kDa)d Vp (nm3)e Ipnorm/Istdnorm,f NSDg
10 mM EGTA 23.7±0.5 68.0±2.0 50.7 45.9±5 79±8 0.91±0.10 0.63±0.02
40 μM Ca2+ 23.1±0.5 70.0±2.0 50.7 46.2±5 66±7 0.92±0.10 0.54±0.01
a

Rg determined from Grunier equation and data that satisfies QmaxxRg<1.3; similar values were obtained using the program GNOM (Svergun, 1992).

b

Dmax was determined using the program GNOM (Svergun, 1992).

c

MMseq is the molecular mass calculated from the primary sequence.

d
MMexp is the molecular mass calculated from the scattering data:
MMprotein=MMlysozyme×Iproteino×ClysozymeIlysozymeo×Cprotein
where MMlysozyme is the molecular mass of lysozyme, I0 is the scattering intensity and C (mg/ml) is the protein concentration (Petoukhov and Svergun, 2006).
e

Vp is the excluded volume (Porod volume) calculated using PRIMUS (Konarev et al., 2003). Data with S>0.25 were excluded from the calculation (Petoukhov and Svergun, 2006; Porod, 1982).

f
Normalized intensities for proteins (p) Ipnorm were calculated by
Ipnorm=(IoC)/MMseq
where I0 is the intensity calculated using the Guinier equation and C (mg/ml) is the protein concentration determined from its absorbance at 280 nm. Lysozyme served as a mono-dispersed protein standard (std). Ideally, the ratio Ipnorm/Istdnorm equals 1.00 (Jeffries et al., 2008; Taraban et al., 2008).
g

After superimposing the independently modeled envelopes, pair-wise normalized spatial discrepancy (NSD) values (Volkov and Svergun, 2003) were calculated as part of the DAMAVER routine. NSD values close to unity indicate good agreement between individual models.