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. 2008 Feb 14;4:29–38.

Figure 3.

Figure 3

Algorithm diagram for coevolution methods based on the correlation of distance matrices. Multiple sequence alignments are used to estimate different kind of distance matrices, which are compared afterwards. Ai and Bi symbolise either the distance between two amino acid sites within the multiple sequence alignment or the distance between two proteins. The correlation between matrices together with the phylogenetic congruence are used to test coevolution between amino acid sites or proteins.