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. Author manuscript; available in PMC: 2009 Jan 7.
Published in final edited form as: Mol Microbiol. 2008 Dec;70(6):1487–1501. doi: 10.1111/j.1365-2958.2008.06495.x

Fig. 3.

Fig. 3

Alignments for short ORFs identified on the basis of DNA homology.

Gene sequences identified in the DNA-as-input search were translated and the predicted protein was used to search for homologs using tblastn. Alignments were generated using ClustalW (Fig. 1http://align.genome.jp). “*” indicates the residues are identical in all sequences and “:” and “.” respectively indicate that conserved and semi-conserved substitutions as defined by ClustalW. Swiss-Prot organism codes are from EcoGene (www.ecogene.org/modules.php?name=NEWT).