Table 2.
Newly identified small proteins
|
Protein Name |
Lengtha |
Flanking Genes |
Strandb |
Information Contentc |
Predicted TM domain |
How Predicted | Amino Acid Sequence |
|---|---|---|---|---|---|---|---|
| IlvX | 16 | ilvL/ilvG | >>> | 15.3 | no | RBS | MNNSTKFCFS RFRTGN |
| YoeI | 20 | yeeF/yeeY | <<< | 8.6 | no | DNA query | MGQFFAYATV ITVKENDHVA |
| YobI | 21 | ruvA/yebB | <<> | 16.0 | no | RBS | MYIFITHFFT EYVILKYLLP I |
| YmjD | 21 | ymjC/ymjY | <<< | 14.8 | no | RBS | MKHIQIRNSD MDWHIAANNL G |
| YnbG | 21 | paaY/ydbA | ><> | 14.6 | no | RBS | MKYINCVYNI NYKLKPHSHY K |
| YpdK | 23 | lpxP/yfdZ | >>< | 8.3 | yes | DNA query | VKYFFMGISF MVIVWAGTFA LMI |
| YoaJ | 24 | yoaK/yeaQ | >><d | 11.5 | yes | RBS + protein query | MKKTTIIMMG VAIIVVLGTE LGWW |
| YqeL | 26 | yqeJ/yqeK | ><< | 15.9 | no | RBS | MKDVDQIFDA LDCHILREYL ILLFYD |
| YrbN | 26 | deaD/nlpI | <<< | 5.3 | no | DNA query | MKIADQFHDE LCRLAAINFE AHVLHG |
| YohP | 27 | mdtQ/dusC | <>< | 15.8 | yes | RBS | MKIILWAVLI IFLIGLLVVT GVFKMIF |
| YdgU | 27 | asr/ydgD | >>> | 4.2 | yes | RBS | MVGRYRFEFI LIILILCALI TARFYLS |
| YnhF | 29 | ydhP/purR | <<> | 5.4 | yes | DNA query | MSTDLKFSLV TTIIVLGLIV AVGLTAALH |
| YoaK | 32 | yeaP/yoaJ | >>>d | 6.9 | yes | RBS + protein query | MRIGIIFPVV IFITAVVFLA WFFIGGYAAP GA |
| YkgR | 33 | ykgM/ykgP | <<< | 15.4 | yes | RBS | MKENKVQQIS HKLINIVVFV AIVEYAYLFL HFY |
| YshB | 36 | hemN/glnG | ><< | 10.6 | yes | RBS + protein query | MLESIINLVS SGAVDSHTPQ TAVAAVLCAA MIGLFS |
| YqfG | 41 | ygfU/idi | >>> | 14.6 | yes | RBS | MNFLMRAIFS LLLLFTLSIP VISDCVAMAI ESRFKYMMLL F |
| YthA | 41 | yjhC/yjhD | >>< | 11.7 | yes | RBS | MIKNFIFDNL IILAVPFMIK TSLKTNLIFF FLCVFVPHMA S |
| YqcG | 46 | ygcF/ygcG | <>> | 16.0 | no | RBS | MSEENKENGF NHVKTFTKII FIFSVLVFND NEYKITDAAV NLFIQI |
a
Unprocessed size.
b
Orientation of flanking genes. > and < denote genes present on the clockwise (Watson) or counterclockwise (Crick) strand of the E. coli chromosome, respectively.
c
Information content for ribosome binding site in bits.
d
yoaJ and yoaK are in the same intergenic interval flanked by yeaP and yeaQ