Table 1.
Genomic data used in this work.
| Bacillaceae | Group | Abbrev. | Accession No. | CDS | GC% |
| Bacillus subtilis 168 | 1* | B. sub (bsu) | NC_000964.2 | 4105 | 43.5 |
| Bacillus licheniformis ATCC 14580 | 1 | B. lic (bli) | NC_006270.2 | 4152 | 46.2 |
| Bacillus halodurans C-125 | B. hal (bha) | NC_002570.2 | 4066 | 43.7 | |
| Bacillus clausii KSM-K16 | B. cla (bcl) | NC_006582.1 | 4096 | 44.8 | |
| Bacillus anthracis Ames | 2* | B. ant (ban) | NC_003997.3 | 5311 | 35.4 |
| Bacillus cereus 14579 | 2 | B. cer (bce) | NC_004722.1 | 5234 | 35.3 |
| Geobacillus kaustophilus HTA426 | G. kau (gka) | NC_006510.1 | 3498 | 52.0 | |
| Oceanobacillus iheyensis HTE831 | O. ihe (oih) | NC_004193.1 | 3500 | 35.7 | |
| (outgroup) | |||||
| Staphylococcus aureus N315 | S. aur (sau) | NC_002745.2 | 2588 | 32.8 | |
| Enterobacteriaceae | |||||
| Escherichia coli K-12 | 3* | E. col (eco) | NC_000913.2 | 4131 | 50.8 |
| Salmonella enterica CT18 | 3 | S. ent (sty) | NC_003198.1 | 4395 | 51.9 |
| Enterobacter sp. 638 | 3 | Enter (ent) | NC_009436.1 | 4115 | 52.9 |
| Erwinia carotovora SCR11043 | E. car (eca) | NC_004547.2 | 4472 | 51.0 | |
| Photorhabdus luminescens TTO1 | P. lum (plu) | NC_005126.1 | 4683 | 42.8 | |
| Sodalis glossinidius 2516 | S. glo (sgl) | NC_007712.1 | 2432 | 54.5 | |
| Serratia proteamaculans 568 | S. pro (spe) | NC_009832.1 | 4891 | 55.0 | |
| Yersinia pestis CO92 | Y. pes (ype) | NC_003143.1 | 3885 | 47.6 | |
| (outgroup) | |||||
| Vibrio cholerae N16961 | V. cho (vch) |
NC_002506.1 NC_002505.1 |
3835 | 47.5 | |
In the Group column, organisms with the same number are those considered to be so close that they are counted only once; organisms with an asterisk are representative genomes for each of the closely related genome groups, which were used in the robustness test and the phylogenetic congruence test. In the Abbrev column, the abbreviated names used in this paper are shown in italic; the names in parentheses are the abbreviated names used in KEGG and MBGD.