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. Author manuscript; available in PMC: 2010 Jan 1.
Published in final edited form as: Harmful Algae. 2009;8(2):196–211. doi: 10.1016/j.hal.2008.05.003

Table 5.

List of specific primers designed

Primer name; spp. amplified Primer sequence; primer length Melting T; G/C%; Sec. struct.
Scripp F; all spp. in the Scrippsiella complex GAATTGTAGTCTGGAGATGTACCAC; 25 bp 61.5 °C; 44%; weak
Scripp R BioCTGAAGTTTTCCCCAGTTGC; 20 bp 63.5 °C; 50%; weak
Protoce F; Protoceratium reticulatum ATGGCGAATGAAGAAGGAGT; 20 bp 62.5 °C; 45%; none
Protoce R BioGATCCACAAGCTAAATCTGAACCT; 24 bp 63.3 °C; 41.67%; very weak
Minimum F; Prorocentrum minimum GGGTCATGGTAGCTCGTCTA; 20 bp 61.7 °C; 55%; very weak
Minimum R BioCGTCTTTGTGTCAGGGAAAT; 20 bp 61.5 °C; 45%; none
Rhatmicmex F; Prorocentrum rhathymum, micans and mexicanum CTTGGCGAGATTGTCATACG; 20bp 63.2 °C; 50%; none
Rhatmicmex R BioCGTCTATGTGTCAGGGAAGC; 20 bp 62.3 °C; 55%; none