Table 2.
Assembly statistics and results of mapping 248 CEGs in C. briggsae, H. sapiens and T. gondii
| Contigs |
Scaffolds |
||||||||
|---|---|---|---|---|---|---|---|---|---|
| Species | Assembly details | n | N50 length (Kb) | Total number of genes (%) | Number of mapped CEGs (%) | n | N50 length (Kb) | Total number of genes (%) | No. of mapped CEGs (%) |
| Caenorhabditis briggsae | 2× | 34 456 | 2.3 | 9912 (46.1) | 110 (44.3) | 10 297 | 14.2 | 11 006 (57.0) | 132 (53.2) |
| 108 Mb | 4× | 20 421 | 7.4 | 15 372 (79.7) | 200 (80.6) | 2268 | 16.4 | 17 738 (91.9) | 226 (91.1) |
| 19 296 genes | 6× | 11 399 | 16.4 | 17 470 (90.5) | 227 (91.5) | 1028 | 465 | 18 809 (97.4) | 238 (95.9) |
| 8× | 7 363 | 28.9 | 18 311 (94.8) | 231 (93.1) | 971 | 983 | 19 071 (98.8) | 241 (97.2) | |
| 10× | 5614 | 37.4 | 18 578 (96.3) | 243 (97.9) | 675 | 1032 | 19 106 (99.0) | 245 (98.8) | |
| CB25 12× | 5341 | 40.7 | 18 530 (96.0) | 239 (96.4) | 899 | 474 | 19 141 (99.1) | 244 (98.3) | |
| Toxoplasma gondii | 0.7× | 39 143 | 0.8 | 889 (11.4) | 10 (4.0) | – | – | – | – |
| 63 Mb | 1× | 45 663 | 1.1 | 1 499 (19,2) | 19 (7.6) | – | – | – | – |
| 7 793 genes | 2× | 36 333 | 2.8 | 3 813 (48.9) | 82 (33.0) | – | – | – | – |
| 4× | 10 594 | 13.9 | 6358 (81.5) | 163 (65.3) | – | – | – | – | |
| 6× | 4 198 | 95.7 | 7 557 (96.9) | 199 (80.2) | 586 | 1000 | 7745 (99.3) | 212 (85.6) | |
| 10× | 3 922 | 397 | 7 678 (98.3) | 207 (83.5) | 669 | 2474 | 7793 (100) | 213 (85.9) | |
| Homo sapiens | draft 1.9× | 590 603 | 3.1 | 4 963 (20.9) | 52 (21.0) | 130 283 | 51.9 | 7930 (33.4) | 105 (42.3) |
| 3 253 Mb | draft 3× | 795 203 | 4.1 | 7 414 (31.2) | 88 (35.5) | 449 727 | 13.5 | 10 189 (43.0) | 125 (50.4) |
| 23 713 genes | draft 4.2× | 435 593 | 13.1 | 12 006 (50.6) | 142 (57.2) | 81 459 | 2425 | 19 333 (81.5) | 225 (90.7) |
| draft 5.3× | 368 201 | 14.7 | 13 009 (54.8) | 148 (59.7) | 28 863 | 692 | 20 557 (86.7) | 228 (91.9) | |
| draft 6× | 296 517 | 19.1 | 12 739 (53.7) | 149 (60.1) | 62 471 | 436 | 18 769 (79.2) | 212 (85.4) | |
| draft 6.6× | 292 555 | 28.8 | 15 592 (65.7) | 179 (72.2) | 77 769 | 8217 | 20 978 (88.5) | 238 (95.9) | |
| draft 7.1× | 131 620 | 44.3 | 16 205 (68.3) | 198 (79.8) | 16 098 | 1042 | 19 895 (83.9) | 230 (92.7) | |
‘CB25’ refers to the 2002 published assembly of C. briggsae. ‘Total number of genes’ refers to the number of genes from the final (highest coverage) assembly for each species that are present in each lower coverage assembly (see Methods section). The total number of genes is listed beneath each species name, along with the estimated genome size. The ‘Mapped CEGs’ column lists numbers of the 248 CEGs that were mapped in the genome of each species. Results are shown for both contig- and scaffold-based assemblies. Figures in parentheses show values as percentages.