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. 2008 Nov 18;9:547. doi: 10.1186/1471-2164-9-547

Table 4.

Codon usages and amino acid frequencies per 1000 of E. sibiricum 255-15 genome and alpha-amylase proteins (Exig_1739 and Exig_2537)

Codon a.a. 255-15 1739 2537 255-15 1739 2537 255-15 1739 2537 255-15 1739 2537
GCA A 22.25 7.17 7.45 CAC H 8.34 14.34 9.31 CCA P 6.40 12.55 1.86 TCG S 14.80 10.75 13.04
GCC A 22.34 17.92 20.48 CAT H 13.16 14.34 16.76 CCC P 2.84 7.17 5.59 TCT S 5.67 7.17 1.86
GCG A 23.65 16.13 27.93 ATA I 2.11 0.00 1.86 CCG P 24.40 26.88 40.97 ACA T 19.13 16.13 7.45
GCT A 12.94 10.75 5.59 ATC I 36.04 32.26 16.76 CCT P 4.30 3.58 5.59 ACC T 10.08 3.58 9.31
TGC C 1.99 1.79 0.00 ATT I 28.88 30.47 31.66 CAA Q 24.76 14.34 20.48 ACG T 29.17 30.47 33.52
TGT C 3.84 0.00 1.86 AAA K 39.13 35.84 18.62 CAG Q 17.85 14.34 22.35 ACT T 4.76 7.17 3.72
GAC D 20.69 34.05 27.93 AAG K 14.14 8.96 9.31 AGA R 1.97 5.38 0.00 GTA V 7.26 10.75 5.59
GAT D 32.71 50.18 48.42 CTA L 3.05 1.79 1.86 AGG R 0.59 0.00 1.86 GTC V 41.07 26.88 42.83
GAA E 53.26 64.52 44.69 CTC L 19.68 7.17 5.59 CGA R 6.12 5.38 9.31 GTG V 10.37 5.38 9.31
GAG E 17.44 21.51 27.93 CTG L 22.47 21.51 27.93 CGC R 9.79 8.96 11.17 GTT V 14.77 12.55 9.31
TTC F 22.14 14.34 14.90 CTT L 16.08 8.96 3.72 CGG R 17.76 17.92 31.66 TGG W 9.70 30.47 31.66
TTT F 21.48 17.92 20.48 TTA L 20.34 17.92 20.48 CGT R 16.41 10.75 11.17 TAC Y 13.81 25.09 26.07
GGA G 22.99 26.88 22.35 TTG L 22.53 17.92 22.35 AGC S 6.96 5.38 5.59 TAT Y 18.94 37.63 35.38
GGC G 14.35 5.38 13.04 ATG M 25.80 23.30 31.66 AGT S 9.57 10.75 9.31 TAA * 2.02 1.79 1.86
GGG G 10.23 16.13 13.04 AAC N 16.91 26.88 18.62 TCA S 10.86 10.75 9.31 TAG * 0.13 0.00 0.00
GGT G 21.50 17.92 11.17 AAT N 15.59 26.88 24.21 TCC S 8.36 8.96 14.90 TGA * 1.36 0.00 0.00

The Chi-square results for the codon usage were not statistically significant for any of the two proteins compared to the genome.

a.a. = amino acid