TABLE 2.

Results of the comparative genomic microarray for one representative of each H. parasuis Nagasaki AT-2 group

Group and gene size	Position covereda	Domain coveredb	Relative FI ratiosc
			Noninvasive tested strains				Invasive tested strains
			SW114	F9	D74	HP-3123	HP-1205	HP-1302	HP-1319	HP-2163	HP-2269	HP-33	Nagasaki
Group 1, vtaA9 (2,859 bp)	26 to 713	SP + Hep_Hag 1 to 5	0.07	0.06	0.07	0.03	0.70	0.50	0.45	0.70	0.18	0.65	1
	415 to 996	Hep_Hag 2 to 7	0.10	0.09	0.06	0.05	0.70	0.60	0.40	0.86	0.17	0.57	0.95
	1567 to 2097	Col 1 to 3	0.08	0.11	0.07	0.04	1.10	0.77	0.58	1.35	0.42	1	1.15
	1901 to 2568	Col 2 to 3 + HIM 2 to 3	0.16	0.10	0.12	0.05	1	0.83	0.55	1.25	0.42	1	1.14
	2437 to 2773	HIM 3 + YadA	0.24	0.28	0.19	0.17	1.20	1.10	0.75	1.22	0.77	1.22	0.96
Group 2, vtaA11 (4,500 bp)	143 to 506	SP + Hep_Hag 1 to 3	0.13	0.13	0.12	0.11	0.38	0.38	0.12	0.12	0.14	0.25	0.99
	713 to 1435	Hep_Hag 5 to 9 + HIM 1	0.13	0.16	0.10	0.02	0.70	0.70	0.42	0.70	0.32	0.65	1.03
	901 to 1617	Hep_Hag 7 to 9 + HIM 1	0.20	0.26	0.23	0.13	0.70	0.80	0.45	0.70	0.56	0.70	1.06
	2100 to 2532	Col 1 to 2	0.23	0.42	0.30	0.20	0.60	0.40	0.30	0.35	0.50	0.61	1.07
	2586 to 3301	Col 3 to 4	0.24	0.24	0.20	0.14	0.80	0.80	0.70	1.00	0.75	0.88	1.07
	2819 to 3570	Col 4 + HIM 3	0.25	0.19	0.16	0.24	0.90	1.00	0.80	0.95	0.90	0.83	0.88
	4125 to 4500	HIM 4 + YadA	0.41	0.65	0.27	0.33	1.10	1.40	0.90	1.00	1.20	1.00	0.97
Group 3, vtaA12 (5,043 bp)	1 to 585	SP + Hep_Hag 1 to 3	0.30	0.42	0.37	0.29	0.90	0.75	0.65	0.60	1.26	0.90	1.02
	1484 to 1873	Col 1 to 2	0.19	0.20	0.14	0.15	1.80	1.90	0.50	0.50	1.60	1.70	1.03
	1949 to 2400	Col 3 to 5	0.07	0.05	0.05	0.05	1.80	2.10	0.55	0.55	2	1.85	1.04
	2483 to 3091	Col 6 to 9	0.12	0.12	0.09	0.06	2.25	1.70	0.55	0.54	2	2.35	1.20
	2654 to 2991	Col 7 to 8	0.09	0.08	0.04	0.06	2	2.50	0.40	0.39	1.80	2.70	1.16
	2936 to 3291	Col 8 to 10	0.08	0.08	0.07	0.04	2.50	2.40	0.40	0.70	1.70	1.60	1.18
	3175 to 3795	Col 10 to 11 + HIM 2	0.26	0.29	0.26	0.20	1.65	1.90	0.85	1	1.90	1.90	1.02
	3996 to 4751	Hep_Hag 6 to 8 + HIM 3	1.10	1.47	0.95	0.96	1.30	1.46	0.08	1.20	1.80	1.28	1.01
	4554 to 5030	HIM 3 + YadA	0.90	0.90	0.75	0.65	0.80	1.10	0.32	1.10	1.20	0.90	0.99

^aRefers to the nucleotide positions probed in relation to each vtaA gene.

^bThe numbers indicate repeats. SP, signal peptide; col, collagen.

^cValues indicate Cγ5/Cγ3 ratios; bold values indicate regions of high divergence or absence in relation to H. parasuis Nagasaki vtaA genes.