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. 2009 Jan;181(1):187–197. doi: 10.1534/genetics.107.080630

Figure 4.—

Figure 4.—

LD decay of r2 based on SNPs observed in a sample of 50 chromosomes, presented as a function of coverage in a 100-kb region. (a) Plot of the r2 estimates obtained from all reads; (b) plot of those estimates when we condition on the number of covered chromosomes being at least 30. “SNP (50)” presents results when using full SNP data and “SNP (30)” is the same as SNP (50) but using only a subset of 30 chromosomes from the sample.