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Estimating θ and ρ in the absence of a reference genome
| X | l | k | θ0 = 100 | ρ0 = 20 | ρ0 = 40 | ρ0 = 60 |
|---|---|---|---|---|---|---|
| 1× | 30 | 20 | 100.5 (16.7) | 21.3 (7.5) | 42.2 (11.4) | 63.2 (15.7) |
| 1× | 50 | 40 | 100.3 (16.3) | 21.5 (7.7) | 42.2 (13.0) | 61.8 (15.1) |
| 0.5× | 30 | 20 | 99.3 (18.0) | 22.2 (11.1) | 44.2 (16.1) | 62.8 (19.2) |
| 0.5× | 50 | 40 | 101.2 (18.2) | 32.8 (34.9) | 47.7 (34.3) | 61.5 (30.9) |
We report the mean (and RMSE) of the estimates over 1000 simulations.
