Table 1.
Transcription factors preferentially expressed in leaves
| a) Digital Northern | ||||||||
| EST library | Family | Gene Model | Protein ID | Linkage group | Start bp | End bp | Clostest ATG | Annotation |
| K | CCAAT-HAP3 | estExt_fgenesh4_kg.C_LG_IX0001 | 814069 | IX | 422283 | 424607 | At2g27470 | CCAAT-box binding transcription factor subunit HAP3-related |
| T | CCAAT-HAP5 | eugene3.00130826 | 571462 | XIII | 7433295 | 7434557 | At1g51060 | Histone H2A |
| T | C2C2-YABBY | grail3.0018017701 | 646464 | III | 10874457 | 10877479 | At2g45190 | AFO/YAB1 |
| b) Microarray | ||||||||
| bHLH | gw1.29.118.1 | 423606 | scaffold 29 | 2272702 | 2274494 | At5g46690 | loop-helix (bHLH) family protein | |
| C2C2-YABBY | gw1.XVI.2137.1 | 256198 | XVI | 4660471 | 4663832 | At2g26580 | YAB5 | |
| C2C2-YABBY | gw1.I.9758.1 | 181158 | I | 11002077 | 11007440 | At2g26580 | YAB5 | |
| C2C2-YABBY | grail3.0018017701 | 646464 | III | 10874457 | 10877479 | At2g45190 | AFO/YAB1 | |
| C2C2-YABBY | grail3.0035001101 | 663774 | XIV | 1201250 | 1204103 | At2g45190 | AFO/YAB1 | |
| C2C2-YABBY | estExt_Genewise1_v1.C_1270153 | 744044 | scaffold 127 | 432420 | 435374 | At2g45190 | AFO/YAB1 | |
| CCAAT-HAP5 | gw1.133.51.1 | 268609 | scaffold 133 | 194018 | 194708 | At5g27670 | Histone H2A | |
| GRF | eugene3.00021070 | 551755 | II | 8750087 | 8753351 | At4g37740 | GRF2 | |
| HB | estExt_fgenesh4_pm.C_LG_II1004 | 830518 | II | 19705723 | 19710899 | At1g05230 | homeobox-leucine zipper family protein | |
| HMG | gw1.I.8656.1 | 180056 | I | 6841319 | 6843651 | At4g11080 | High mobility group (HMG1/2) family protein | |
| HMG | estExt_fgenesh4_pg.C_LG_VII1313 | 820147 | VII | 12719268 | 12721109 | At5g23420 | High mobility group (HMG6) | |
| MYB | gw1.147.131.1 | 271563 | scaffold 147 | 383655 | 384226 | At1g22640 | myb family transcription factor (MYB3) | |
| MYB | estExt_fgenesh4_pm.C_LG_VI0283 | 831892 | VI | 5731437 | 5734378 | At2g37630 | AS1 | |
| MYB | gw1.XII.82.1 | 421622 | XII | 9811004 | 9812387 | At5g14750 | Werewolf1 (WER1) | |
| ZF-HD | gw1.IV.4567.1 | 199478 | IV | 11561033 | 11561668 | At2g02540 | zinc finger homeobox family protein (ZFHD4) | |
| ZF-HD | fgenesh4_pg.C_LG_V001422 | 761370 | V | 15831484 | 15832356 | At2g18350 | zinc finger homeobox family protein ATHB24) | |
| ZF-HD | gw1.41.334.1 | 287849 | scaffold 41 | 1309979 | 1310581 | At4g24660 | zinc finger hmeobox family protein ATHB22/MEE68) | |
| ZF-HD | gw1.V.4670.1 | 209269 | V | 8372094 | 8372846 | At5g65410 | zinc finger homeobox family protein (ZFHD2) | |
Transcription factors significantly over-represented in leaf EST libraries contained in PopulusDB [53] and identified as being informative in the discrimination of leaves from non-leaf tissues in the UPSC-TC experiments using Orthogonal Projection to Latent Sqaures.