Table 3.
Thellungiela genes showing low identity against Arabidopsis genes classified in 'transport' using GO slima
| Clone name | InterPro ID | Description | AGI codeb | E value c |
| RTFL01-07-H15 | IPR001807 | Chloride channel, voltage gated | AT5G40890.2 | 1.00E-49 |
| RTFL01-12-M19 | IPR000194 | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding | AT1G60190.1 | 6.00E-45 |
| RTFL01-29-P17 | IPR000463 | Cytosolic fatty-acid binding | AT2G25590.1 | 8.00E-45 |
| RTFL01-05-O18 | IPR000803 | Facilitated glucose transporter | AT3G58130.2 | 5.00E-43 |
| RTFL01-21-M15 | IPR003612 | Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor | AT2G38540.1 | 5.00E-43 |
| RTFL01-24-G14 | IPR000264 | Serum albumin | AT5G09460.1 | 5.00E-43 |
| RTFL01-49-P05 | IPR003612 | Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor | AT2G38540.1 | 5.00E-43 |
| RTFL01-36-E03 | IPR007271 | Nucleotide-sugar transporter | AT5G65000.2 | 3.00E-41 |
| RTFL01-05-G14 | IPR001993 | Mitochondrial substrate carrier | AT5G42130.1 | 3.00E-38 |
| RTFL01-14-G02 | IPR000194 | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding | AT1G08010.2 | 1.00E-34 |
| RTFL01-43-C04 | IPR002075 | Nuclear transport factor 2 | AT1G69250.1 | 4.00E-34 |
| RTFL01-21-H04 | IPR004240 | Nonaspanin (TM9SF) | AT4G12650.1 | 5.00E-34 |
| RTFL01-18-D17 | IPR006455 | Homeobox domain, ZF-HD class | AT5G42780.1 | 2.00E-31 |
| RTFL01-07-P02 | IPR005829 | Sugar transporter superfamily | AT4G10410.1 | 2.00E-30 |
| RTFL01-08-J20 | IPR001757 | ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter | AT2G31150.1 | 3.00E-28 |
| RTFL01-06-N05 | IPR003612 | Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor | AT3G18840.2 | 1.00E-27 |
| RTFL01-40-M18 | IPR004240 | Nonaspanin (TM9SF) | AT1G10950.1 | 1.00E-27 |
| RTFL01-11-J21 | IPR000194 | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding | AT3G24503.1 | 7.00E-27 |
| RTFL01-39-I23 | IPR008389 | ATPase, V0 complex, subunit H | AT4G26710.2 | 2.00E-23 |
| RTFL01-52-J14 | IPR000194 | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding | AT3G54760.1 | 5.00E-21 |
| RTFL01-33-P14 | IPR000568 | ATPase, F0 complex, subunit A | AT4G13740.1 | 6.00E-15 |
| RTFL01-01-D06 | IPR000194 | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding | AT1G29760.1 | 6.00E-15 |
| RTFL01-20-A07 | IPR000194 | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding | AT1G29760.1 | 6.00E-15 |
| RTFL01-28-P24 | IPR001622 | Voltage-dependent potassium channel | AT5G55430.1 | 3.00E-13 |
| RTFL01-25-D12 | IPR000245 | ATPase, V0 complex, proteolipid subunit C, | AT1G75630.1 | 7.00E-08 |
| RTFL01-22-P12 | IPR000264 | Serum albumin | AT5G09460.1 | 1.00E-07 |
| RTFL01-03-P24 | IPR006121 | Heavy metal transport/detoxification protein | AT5G11890.1 | 2.00E-06 |
| RTFL01-40-P02 | IPR002946 | Intracellular chloride channel | AT5G08450.3 | 3.00E-04 |
| RTFL01-03-G04 | IPR003663 | Sugar transporter | AT5G50540.1 | 0.001 |
| RTFL01-11-N06 | IPR000109 | TGF-beta receptor, type I/II extracellular region | AT3G55610.1 | 0.019 |
| RTFL01-13-J08 | IPR005829 | Sugar transporter superfamily | AT5G49665.1 | 0.073 |
| RTFL01-11-G05 | IPR007114 | Major facilitator superfamily | AT1G05300.2 | 0.075 |
| RTFL01-17-J21 | IPR000194 | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding | AT4G19830.1 | 0.25 |
| RTFL01-38-L07 | IPR011116 | SecA Wing and Scaffold | AT3G55160.1 | 0.76 |
| RTFL01-20-G20 | IPR004100 | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal | AT5G60470.1 | 1.2 |
a The 9,569 nonredundant Thellungiella genes were submitted to InterPro. The 763 Thellungiella genes exhibiting low identity (E value > 1.0e-50) against Arabidopsis genes assigned to InterPro ID were classified according to the GO terms using GO slim.
b Arabidopsis gene showing the highest identity with the Thellungiella cDNA clone.
c Sequence identity between the Thellungiella clone and the Arabidopsis counterpart (show AGI code) using BLASTX searches
against Arabidopsis database.