. 2003 Nov;185(22):6513–6521. doi: 10.1128/JB.185.22.6513-6521.2003

TABLE 2.

Summary of the characterized phytoplasmal (AY) clones^a

Clone information					Blast results
Clone	GenBank accession no.	% GC	ORF no.	Base position and orientation^b	Homologous protein	Organism	% Identity	% Similarity
A1	AY191277	54	1	89-988 +	Hypothetical protein^c
			2	153-1067 +	Hypothetical protein
			3	982-350 −	Hypothetical protein
A2	AY191278	36	1	605-315 −	Conserved hypothetical protein	Helicobacter pylori 26695	26	47
			2	648-818 +	Hypothetical protein
			3	1309-1127 −	Hypothetical protein
			4	1592-1443 −	gtf2ird2	Mus musculus	40	59
			5	1640-1822 +	Hypothetical protein	Plasmodium falciparum 3D7	46	64
			6	2248-1901 −	IpaD	Shigella sonnei	31	58
			7	2428-2261 −	Hypothetical protein
			8	2460-2636 +	Similar to hornerin	Mus musculus	40	52
			9	2850-3200 +	Putative dipeptidase protein	Sinorhizobium meliloti	50	56
			10	3172-2996 −	Hypothetical protein
			11	3107-3370 +	Hypothetical protein
			12	3497-3823 +	agCP3554	Anopheles gambiae	51	69
A10	AY191279	24	1	2-238 +	rRNA methylase	Thermoanaerobacter tengcongensis	40	60
			2	1502-240 −	Threonine dehydratase	Bacillus halodurans	56	75
A93	AY191280	25	1	214-1 −	NADH dehydrogenase 1	Mitochondrion of Flexarida chaotica	79	91
A115	AY191281	23	1	268-1 −	Hypothetical protein
			2	69-350 +	EF-G	Porphyromonas gingivalis	58	83
			3	326-628 +	rpS10	Leptospira interrogans	59	79
			4	908-661 −	Hypothetical protein
			5	665-909 +	rpL3	Thermoanaerobacter tengcongensis	59	78
A167	AY191282	38	1	725-1 −	DNA polymerase	Mitochondrion of Neurospora intermedia	32	48
			2	774-451 −	Putative DNA polymerase	Mitochondrion of Porphyra sp.	30	55
A182	AY191283	26	1	56-400 +	rpL18	Bacillus stremophilus	45	57
			2	413-934 +	rpS5	Shewanella oneidensis MR-1	46	64
			3	939-1105 +	rpL15	Neisseria meningitidis MC58	76	85
A226	AY191284	29	1	230-1 −	Cytochrome c oxidase polypeptide III	Mitochondrion of Spodoptera frugiperda	67	77
A239	AY191285	24	1	8-361 +	Acetohydroxy acid synthase II	Escherichia coli O157:H7 EDL933	35	48
			2	349-609 +	Hypothetical protein
			3	600-1634 +	Ketol-acid reductoisomerase, mito- hondrial precursor	Neurospora crassa	49	66
A244	AY191286	27	1	2-871 +	2-Isopropylmalate synthase	Aquifex aeolicus	53	71
			2	872-1885 +	3-Isopropylmalate dehydratase large subunit	Oceanobacillus iheyensis	49	68
A276	AY191287	34	1	78-164 +	Surface protein, putative	Shewanella oneidensis MR-1	39	58
A290	AY191288	18	1	95-493 +	Signal peptidase 1	Chlorobium tepidume TLS	38	57
			2	450-647 +	rpS21	Myxococcus xanthus	44	68
			3	651-963 +	Shikimate 5-dehydrogenase	Clostridium perfringens	36	63
A293	AY217338	33	1	617-378 −	Hypothetical protein
			2	629-883 +	Hypothetical protein
			3	1214-702 −	RNA polymerase I	Plasmodium falciparum 3D7	44	67
A294	AY191289	30	1	133-2 −	Putative transport protein	Escherichia coli	39	51
A295	AY1912290	34	1	188-1 −	Hypothetical protein	Leptospira interrogans serovar Lai strain 56601	29	52
			2	13-210 +	Putative N-acetyltransferase Camello 4	Mus musculus	31	54
A314	AY191291	25	1	5-981+	NADH dehydrogenase subunit 5	Mitochondrion of Pyrocoelia rufa	51	66
A315	AY191292	48	1	128-2 −	Integrase protein	Salmonella enterica serovar Typhimurium	54	62
A328	AY191293	30	1	106-1197 +	Hypothetical protein
A352	AY217339	33	1	1314-1084 −	Caspase-9 long chain	Mouse	50	62
			2	1231-1551 +	Outer capsid protein	Porcine group C rotavirus	40	65
			3	1343-1510 +	Hypothetical protein
			4	1886-2071 +	Hypothetical protein
			5	2664-2825 +	Hypothetical protein
			3	508-359 −	Hypothetical protein			/PICK>
A370	AY217340	40	1	534-1 −	Reverse transcriptase	Picea glauca	49	69
			2	1250-375 −	Putative Gag-Pol polyprotein	Oryza sativa	37	56
			3	1639-1328 −	Putative copia-type polyprotein	Oryza sativa	51	64
A380	AY191294	23	1	2-172 +	Cytochrome oxidase subunit III	Mitochondrion of Manis tetradactyla	45	60
			2	225-599 (+)	NADH dehydrogenase subunit 3	Anopheles gambiae	64	85
			3	1302-709(−)	Cyclophilin D	Dictyostelium discoideum	40	56
A424	AY191295	29	1	309-476 +	Hypothetical protein
			2	322-471 +	Hypothetical protein
A427	AY191296	22	1	2-160 +	Threonyl-tRNA synthetase	Buchnera aphidicola strain sg	92	94
A440	AY191297	29	1	4-429 +	Elongation factor Tu	Cellulophaga lytica	76	88
			2	652-891 +	rpL11	Chlamydia muridarum	63	86
A448	AY191298	22	1	194-1 −	rpS8	Listeria innocuus	62	81
			2	200-723 +	rpL6	Oceanobacillus iheyensis	43	60
A449	AY191299	31	1	743-1012 +	Hypothetical protein
A450	AY191300	39	1	175-2(−)	Conserved hypothetical protein	Agrobacterium tumefaciens	33	53
			2	215-18 −	Nef attachable protein	Homo sapiens	38	58
A458	AY191301	45	1	222-1 −	Yjcl protein	Bacillus halodurans	33	52
A463	AY191302	32	1	357-37 −	DNA-adenine methyltransferase	Actinobacillus actinomycetemcomitans	28	46
			2	269-436 +	Hypothetical protein
			3	542-282 −	Hypothetical protein
			4	530-781 +	Retroelement	Tricholoma matsutake	27	44
A526	AY217341	29	1	129-28 −	Fusolin	Nucleopolyhedrovirus of Autographia californica	48	68
A533	AY217342	34	1	655-825 +	Hypothetical protein
			2	855-1061−	ATPase subunit 6	Kinetoplast of Trypanosoma brucei	31	45
A540	AY217343	41	1	1-256 +	agCP1945	Anopheles gambiae	34	49

Sequences of over 50 amino acids lacking an initial methionine or a stop codon (usually ORFs at the ends of the clones) are also included.

The orientation from the T7 promoter end of the clone is arbitrarily designated +.

A sequence of at least 50 amino acids with no match by BlastX is termed a hypothetical protein.